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View Structure Prediction Details

Protein: lys2
Organism: Schizosaccharomyces pombe
Length: 721 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys2.

Description E-value Query
Range		 Subject
Range
LEUC_RHIPU - 3-isopropylmalate dehydratase OS=Rhizomucor pusillus GN=LEUA PE=3 SV=1
 726.0 [0..59] [703..1]
gi|7437043 - gi|7437043|pir||T10101 aconitate hydratase (EC 4.2.1.3) - cucurbit
gi|868003 - gi|868003|dbj|BAA06108.1| aconitase [Cucurbita cv. Kurokawa Amakuri]
ACOC_CUCMA - Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1
 723.0 [0..6] [719..24]
gi|83851579, gi|... - gi|83944797|ref|ZP_00957163.1| aconitate hydratase [Oceanicaulis alexandrii HTCC2633], gi|83851579|g...
 722.0 [0..3] [716..16]
gi|29788133 - gi|29788133|emb|CAD68165.1| 3-isopropylmalate dehydratase [Cloning vector pEUKA11]
gi|29788127 - gi|29788127|emb|CAD68161.1| putative alpha-isopropylmalate isomerase [Mucor circinelloides f. lusita...
 719.0 [0..59] [703..1]
LEUC_SCHPO - 3-isopropylmalate dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=leu2 PE=1 SV...
leu2 - 3-isopropylmalate dehydratase Leu2
 719.0 [0..53] [703..1]
LEUC_RHINI - 3-isopropylmalate dehydratase OS=Rhizopus niveus GN=LEU1 PE=3 SV=1
 719.0 [0..59] [703..1]
ACOC_ORYSJ - Putative aconitate hydratase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os08g0191100 PE=3 SV=1
ACOC_ORYSA - Putative aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) - Oryza sat...
 718.0 [0..6] [719..24]
gi|30407706 - gi|30407706|gb|AAP30039.1| aconitase [Lycopersicon pennellii]
 717.0 [0..6] [719..24]
gi|3309243 - gi|3309243|gb|AAC26045.1| aconitase-iron regulated protein 1 [Citrus limon]
 716.0 [0..4] [719..19]

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Predicted Domain #1
Region A:
Residues: [1-721] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGEMHHPY QAFSKVGKCE ISQTNPSFSS GMRCLVRSAD IQFKGICGLT RGFASFNKPP  60
   61 QTITEKIVQK FAQNIPENKY VRSGDYVTIK PKHCMSHDNS WPVALKFMGI GAKKVFDNRQ 120
  121 IVCTLDHDVQ NKSEANLRKY KNIESFAKGQ GIDFYPAGRG IGHQIMVEQG YAMPGSMAVA 180
  181 SDSHSNTYGG VGCLGTPIVR TDAAAIWATG QTWWQIPPIA RVNLVGQLPK GLSGKDIIVS 240
  241 LCGAFNHDEV LNHAIEFYGE GLNSLSIESR LTIANMTTEW GALSGLFPTD EKLLAWYEDR 300
  301 LKFLGPNHPR VNRETLDAIK ASPILADEGA FYAKHLILDL STLSPAVSGP NSVKVYNSAA 360
  361 TLEKKDILIK KAYLVSCTNG RLSDIHDAAE TVKGKKVADG VEFYVGAASS EVEAAAQKNG 420
  421 DWQTLIDSGA RTLPAGCGPC IGLGTGLLKD GEVGISATNR NFKGRMGSRE ALAYLASPAV 480
  481 VAASAIAGKI VAPEGFKNAV SLVSAVDITD KVNKQTASKS STEAVDSETA IIDGFPSIVA 540
  541 GEIVFCDADN LNTDGIYPGR YTYRDDITKE EMAKVCMENY DSEFGKKTKK DDILVSGFNF 600
  601 GTGSSREQAA TAILSRGIPL VVGGSFSDIF KRNSINNALL AIQLPDLVQK LRTAFANESK 660
  661 ELTRRTGWHL KWDVRKSTVT VTTSDNKEMS WKIGELGNSV QSLFVRGGLE GWVKHEISKS 720
  721 N

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Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5acnA
Description: STRUCTURE OF ACTIVATED ACONITASE. FORMATION OF THE (4FE-4S) CLUSTER IN THE CRYSTAL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-isopropylmalate dehydratase activity 11.6597692115322 bayes_pls_golite062009
aconitate hydratase activity 5.86356477922338 bayes_pls_golite062009
structural constituent of ribosome 2.93956285477489 bayes_pls_golite062009
catalytic activity 2.4040324437254 bayes_pls_golite062009
carbon-oxygen lyase activity 2.08349115784849 bayes_pls_golite062009
hydro-lyase activity 2.04845291489052 bayes_pls_golite062009
lyase activity 2.0080619912194 bayes_pls_golite062009
nucleic acid binding 1.67435647648998 bayes_pls_golite062009
binding 1.24981419049889 bayes_pls_golite062009
DNA binding 1.05282906893033 bayes_pls_golite062009
structural molecule activity 0.870913754566634 bayes_pls_golite062009
mRNA binding 0.52321922280827 bayes_pls_golite062009
RNA binding 0.41480744631042 bayes_pls_golite062009
iron-sulfur cluster binding 0.239736179000069 bayes_pls_golite062009
metal cluster binding 0.239736179000069 bayes_pls_golite062009
protein binding 0.232638130896339 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle