YRC Public Data Repository - Protein Structure Prediction

Protein:	trs31
Organism:	Schizosaccharomyces pombe
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trs31.

Description	E-value	Query Range	Subject Range
gi\|218188936 - gi\|218188936\|gb\|EEC71363.1\| hypothetical protein OsI_03459 [Oryza sativa Indica Group] gi\|222619145, gi... - gi\|56784761\|dbj\|BAD81934.1\| SPP30-like [Oryza sativa Japonica Group], gi\|56784129\|dbj\|BAD81514.1\| SP...	230.0	[0..26]	[209..11]
gi\|4959712 - gi\|4959712\|gb\|AAD34459.1\|AF136010_1 SPP30 [Solanum chacoense]	229.0	[0..26]	[209..11]
gi\|145018358, gi... - gi\|39974291\|ref\|XP_368536.1\| hypothetical protein MGG_00708 [Magnaporthe grisea 70-15], gb\|EAA49050....	227.0	[0..22]	[208..19]
orf19.7615 - orf19.7615 CGDID:CAL0000823 Assembly 19, Contig19-2518 (146193, 146939) CDS, translated using codon ... gi\|46441190, gi\|... - gi\|68473141\|ref\|XP_719376.1\| hypothetical protein CaO19.7615 [Candida albicans SC5314], gi\|46441190\|... gi\|238880401 - gi\|238880401\|gb\|EEQ44039.1\| conserved hypothetical protein [Candida albicans WO-1]	224.0	[0..19]	[207..55]
gi\|46123021, gi\|... - gi\|46123021\|ref\|XP_386064.1\| hypothetical protein FG05888.1 [Gibberella zeae PH-1], gi\|42550852\|gb\|E...	221.0	[0..22]	[209..26]
gi\|21555061, gi\|... - gi\|9759528\|dbj\|BAB10994.1\| unnamed protein product [Arabidopsis thaliana], gi\|28466921\|gb\|AAO44069.1...	219.0	[0..26]	[208..11]
CG10153-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10153 (CG10153, FBgn0033962). It is a prote... gi\|220944180, gi... - gi\|220954004\|gb\|ACL89545.1\| CG10153-PA [synthetic construct], gi\|220944180\|gb\|ACL84633.1\| CG10153-PA... gi\|194125863, gi... - gi\|195334455\|ref\|XP_002033893.1\| GM20187 [Drosophila sechellia], gi\|194125863\|gb\|EDW47906.1\| GM20187... gi\|195486081, gi... - gi\|195486081\|ref\|XP_002091352.1\| GE12291 [Drosophila yakuba], gi\|194177453\|gb\|EDW91064.1\| GE12291 [D... gi\|194882985, gi... - gi\|194882985\|ref\|XP_001975590.1\| GG22402 [Drosophila erecta], gi\|190658777\|gb\|EDV55990.1\| GG22402 [D...	219.0	[0..15]	[208..5]
gi\|54635793\|gb\|E... - GA10115-PA [Drosophila pseudoobscura], GA10115 [Drosophila pseudoobscura pseudoobscura] gi\|194110042, gi... - gi\|195150513\|ref\|XP_002016195.1\| GL10626 [Drosophila persimilis], gi\|194110042\|gb\|EDW32085.1\| GL1062... gi\|125808057, gi... - gi\|54635793\|gb\|EAL25196.1\| GA10115 [Drosophila pseudoobscura pseudoobscura], gi\|125808057\|ref\|XP_001...	218.0	[0..15]	[208..5]
gi\|18375945 - gi\|18375945\|emb\|CAD21244.1\| related to SPP30 protein [Neurospora crassa]	218.0	[0..22]	[209..26]
gi\|55234579, gi\|... - gi\|58394010\|ref\|XP_320447.2\| ENSANGP00000016792 [Anopheles gambiae str. PEST], gi\|55234579\|gb\|EAA006... AGAP012083-PA, A... - Trafficking protein particle complex 5\|protein_coding\|3L:37465243:37466058:-1\|gene:AGAP012080, Traff...	217.0	[0..17]	[208..5]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTNKELFR SSVSESLKST APLMGKSVYE QNLNKIRNSD VNLSSFAFIF SELIQRIQSQ  60
   61 VSGIQEFEEK LNEHGYRVGQ KLVELVVWRE RNPKRETRIL GILQYIHSSV WKYLFGKHAD 120
  121 SLEKSKEASD EYMIVDNNPL LNKFISVPKE MNQLNCCAYL AGIIEGFLDS AQFPCKASAH 180
  181 SVPLSQYPYR TVILIKLDPS VIAREEVLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.30103
Match:	2j3wB
Description:	No description for 2j3wB was found.

Predicted functions:

Term	Confidence	Notes
Rab guanyl-nucleotide exchange factor activity	5.6079912636527	bayes_pls_golite062009
binding	1.59771877750275	bayes_pls_golite062009
protein binding	1.1027485517601	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: