YRC Public Data Repository - Protein Structure Prediction

Protein:	atp12
Organism:	Schizosaccharomyces pombe
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp12.

Description	E-value	Query Range	Subject Range
HGNC:18802\|MIM:6... - synthase mitochondrial F1 complex assembly factor 2 gi\|117645306 - gi\|117645306\|emb\|CAL38119.1\| hypothetical protein [synthetic construct] ATPAF2 - ATP synthase mitochondrial F1 complex assembly factor 2	304.0	[0..27]	[270..35]
gi\|114668878, gi... - gi\|114668880\|ref\|XP_001159122.1\| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 ...	304.0	[0..27]	[270..35]
gi\|62656170, gi\|... - gi\|62656170\|ref\|XP_220522.3\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	304.0	[0..28]	[270..45]
gi\|109113499 - gi\|109113499\|ref\|XP_001092786.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	303.0	[0..27]	[270..35]
gi\|149262138, gi... - gi\|56205548\|emb\|CAI24077.1\| ATP synthase mitochondrial F1 complex assembly factor 2 [Mus musculus], ...	303.0	[0..28]	[270..45]
gi\|44983409 - gi\|44983409\|gb\|AAS52545.1\| AEL140Cp [Ashbya gossypii ATCC 10895] gi\|44983409, gi\|... - gi\|45190467\|ref\|NP_984721.1\| AEL140Cp [Ashbya gossypii ATCC 10895], gi\|44983409\|gb\|AAS52545.1\| AEL14...	296.0	[0..2]	[272..1]
ATPF2_BOVIN - ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1	295.0	[0..6]	[270..14]
gi\|20151503 - gi\|20151503\|gb\|AAM11111.1\| GM08665p [Drosophila melanogaster]	288.0	[0..15]	[278..15]
gi\|38174102, gi\|... - gi\|45360725\|ref\|NP_989036.1\| hypothetical protein LOC394633 [Xenopus (Silurana) tropicalis], gi\|3817...	286.0	[0..32]	[270..28]

Back

Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSLQFYRL SSKNLLSFKT CYSFYSTKAS SPLPQPSFRR FWKNTATKIQ NGEVLIQLDG  60
   61 RNLKSPSGKI VKVPKEMELL AHLIALEWDR LPSTSVRQHN LPITSLVSRA IDISQFKKEE 120
  121 KELLSTQLIR FLDTDTILIY SPETEYEGKL LEEQKENWWP LKETFENKLG VQLSYLDGDA 180
  181 GIIAHKQTQE THERIRNWLS SLNSWQLAAF ERSVSCCKSF IVSFMILKGY LNSEKAAALT 240
  241 NLELQYQTNR WGSLEDDNED LKNKLASSAI LSRCIEDMHD KSNEHAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.09691
Match:	2r6iA
Description:	No description for 2r6iA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.14957672468792	bayes_pls_golite062009
protein binding	1.2388395457113	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: