YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC216.04c
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC216.04c.

Description	E-value	Query Range	Subject Range
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	234.0	[0..4]	[138..3]
gi\|114191938, gi... - gi\|115398932\|ref\|XP_001215055.1\| peptide methionine sulfoxide reductase msrB [Aspergillus terreus NI...	233.0	[0..1]	[137..1]
gi\|70991653, gi\|... - gi\|70991653\|ref\|XP_750675.1\| methionine-R-sulfoxide reductase, putative [Aspergillus fumigatus Af293...	231.0	[0..1]	[136..64]
gi\|49070108, gi\|... - gi\|71006418\|ref\|XP_757875.1\| hypothetical protein UM01728.1 [Ustilago maydis 521], ref\|XP_399343.1\| ...	230.0	[0..2]	[135..103]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	230.0	[0..2]	[133..36]
gi\|146408992, gi... - gi\|78699097\|ref\|ZP_00863595.1\| Methionine sulfoxide reductase B [Bradyrhizobium sp. BTAi1], gi\|78512...	228.0	[0..2]	[136..34]
gi\|38108503, gi\|... - gi\|39968807\|ref\|XP_365794.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA54511....	227.0	[0..1]	[134..1]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	227.0	[0..6]	[130..67]
gi\|75908017, gi\|... - gi\|75908017\|ref\|YP_322313.1\| methionine sulfoxide reductase B [Anabaena variabilis ATCC 29413], gi\|7...	227.0	[0..2]	[133..36]
gi\|91799779, gi\|... - gi\|92116885\|ref\|YP_576614.1\| methionine sulfoxide reductase B [Nitrobacter hamburgensis X14], gi\|917...	226.0	[0..2]	[136..38]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFPLEKSED EWKKELGPEK YRIMRQKGTE HPGAGRFTHQ FPKQGVFVCA ACKELLYKAS  60
   61 TKFESHCGWP AFFDNLPGKV KRIEDNSYGM HRVEAVCANC GGHLGHIFKG EGYSNPTDER 120
  121 HCINSASLEF HNEATNDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.221849
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: