YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1672.12c
Organism:	Schizosaccharomyces pombe
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.12c.

Description	E-value	Query Range	Subject Range
gi\|46125885, gi\|... - gi\|46125885\|ref\|XP_387496.1\| hypothetical protein FG07320.1 [Gibberella zeae PH-1], gi\|42554710\|gb\|E...	346.0	[0..1]	[287..5]
gi\|145019307, gi... - gi\|39945898\|ref\|XP_362486.1\| hypothetical protein MGG_08069 [Magnaporthe grisea 70-15], gb\|EAA57100....	345.0	[0..1]	[290..8]
gi\|44986295 - gi\|44986295\|gb\|AAS54755.1\| AGR265Wp [Ashbya gossypii ATCC 10895] gi\|45201361, gi\|... - gi\|45201361\|ref\|NP_986931.1\| AGR265Wp [Ashbya gossypii ATCC 10895], gi\|44986295\|gb\|AAS54755.1\| AGR26...	337.0	[0..6]	[292..12]
GET4 - golgi to ER traffic protein 4 homolog (S. cerevisiae)	337.0	[0..5]	[291..23]
gi\|159122358 - gi\|159122358\|gb\|EDP47479.1\| DUF410 domain protein [Aspergillus fumigatus A1163] gi\|70984104, gi\|... - gi\|70984104\|ref\|XP_747572.1\| DUF410 domain protein [Aspergillus fumigatus Af293], gi\|66845199\|gb\|EAL...	332.0	[0..1]	[292..1]
gi\|109495321, gi... - gi\|109496673\|ref\|XP_001074468.1\| PREDICTED: similar to CG9853-PA [Rattus norvegicus], gi\|109495321\|r...	328.0	[0..5]	[275..103]
gi\|190407483 - gi\|190407483\|gb\|EDV10750.1\| hypothetical protein SCRG_01557 [Saccharomyces cerevisiae RM11-1a] gi\|151945783 - gi\|151945783\|gb\|EDN64024.1\| conserved protein [Saccharomyces cerevisiae YJM789] GET4_YEAST - Golgi to ER traffic protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GET4 PE=1 ... GET4 - Protein of unknown function, highly conserved across species and homologous to human gene C7orf20; i...	323.0	[0..3]	[292..15]
gi\|49098384, gi\|... - gi\|67540690\|ref\|XP_664119.1\| hypothetical protein AN6515.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	322.0	[0..1]	[292..1]
GET4_MOUSE - Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=1 SV=2	322.0	[0..5]	[275..23]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKIKRAEG RLREDPYEGH QMLRTLVNRQ VKAKKHDDAV ALLYSGAKTL FEIEQTGSAA  60
   61 DLAIYMLDVY EKASYAASLD NKARALTLLG LFPAEEGARK QYVKRLLEWS KSAGPQGDKD 120
  121 VHFAVATMFV KWKEPASAEK HFVLGNEKSA RAYGETMYYW FTSDSSISPD TFAGRPVLNY 180
  181 LLAENLISAW NSLETFTKHF TKSNAPDVEN MSFDGKDFPV FKEYPQMNFL HLLIFTAYRK 240
  241 DKETYLSLVQ KYPKKQDWEA ALAKIEEIYF GIRPVSNQPN ILANLMSSLF SGPPAATNQL 300
  301 DLE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	1qqeA
Description:	Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.64850159998065	bayes_pls_golite062009
transcription regulator activity	1.96534484578496	bayes_pls_golite062009
nucleic acid binding	1.64804251600372	bayes_pls_golite062009
DNA binding	1.63530462331869	bayes_pls_golite062009
protein binding	1.51322932625387	bayes_pls_golite062009
transcription factor activity	0.941893540415683	bayes_pls_golite062009
transcription factor binding	0.370606597126089	bayes_pls_golite062009
transcription cofactor activity	0.0874081614883346	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: