YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC644.09
Organism:	Schizosaccharomyces pombe
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC644.09.

Description	E-value	Query Range	Subject Range
gi\|153839183, gi... - gi\|153839183\|ref\|ZP_01991850.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28807626, gi\|... - gi\|28899390\|ref\|NP_798995.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633], gi\|28807626\|dbj\|BAC60879.1... gi\|28807626 - gi\|28807626\|dbj\|BAC60879.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633]	198.0	[0..1]	[230..1]
gi\|91228687, gi\|... - gi\|91228687\|ref\|ZP_01262601.1\| FkuA [Vibrio alginolyticus 12G01], gi\|91187758\|gb\|EAS74076.1\| FkuA [V...	195.0	[0..1]	[226..1]
gi\|89091926, gi\|... - gi\|89091926\|ref\|ZP_01164881.1\| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92], gi\|8908...	193.0	[0..1]	[224..1]
YPI1_VIBAL - UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1	193.0	[0..1]	[226..1]
gi\|78503838, gi\|... - gi\|78688420\|ref\|ZP_00853110.1\| Protein of unknown function UPF0001 [Shewanella sp. ANA-3], gi\|785038...	193.0	[0..1]	[226..1]
gi\|82404395, gi\|... - gi\|82497569\|ref\|ZP_00883101.1\| Protein of unknown function UPF0001 [Shewanella sp. MR-4], gi\|8240439...	192.0	[0..1]	[229..1]
gi\|194538704, gi... - gi\|75855123\|ref\|ZP_00762784.1\| COG0325: Predicted enzyme with a TIM-barrel fold [Vibrio sp. Ex25], g...	191.0	[0..1]	[226..1]
gi\|78508544, gi\|... - gi\|78692054\|ref\|ZP_00856630.1\| Protein of unknown function UPF0001 [Shewanella sp. MR-7], gi\|7850854...	189.0	[0..1]	[229..1]
Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1 Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1	188.0	[0..2]	[227..1]
Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae GN=HI_0090 PE=1 SV=1 Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_...	188.0	[0..2]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIHSCLDL IRSQIQQSAN GRNVLLVAVS KFHPVETLME AYNAGQRHFG ENYMQEFLKK  60
   61 VELMPDDVQW HFIGSLQSSK CKKIASVKNL YSIETIDTEK KARLVNSARE ALQLPLNVYI 120
  121 QVNTSGEENK GGVTPSKVLE LCKQVQDMKY LRLKGLMTIG SISNSQLSDH NPDFQVLSDL 180
  181 RESLQNELGI PLQLSMGMSS DYLLAIKYGS DSVRVGSSIF GSRPTEKPSD VHISASK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1b54A
Description:	CRYSTAL STRUCTURE OF A YEAST HYPOTHETICAL PROTEIN-A STRUCTURE FROM BNL'S HUMAN PROTEOME PROJECT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alanine racemase activity	2.62362449847897	bayes_pls_golite062009
amino-acid racemase activity	2.31165775898309	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	2.17003836264776	bayes_pls_golite062009
catalytic activity	1.23611818854966	bayes_pls_golite062009
binding	1.14537370368371	bayes_pls_golite062009
diaminopimelate decarboxylase activity	0.492894938678183	bayes_pls_golite062009
racemase and epimerase activity	0.328743179708914	bayes_pls_golite062009
lyase activity	0.320782640542698	bayes_pls_golite062009
protein binding	0.20402482036521	bayes_pls_golite062009
carboxy-lyase activity	0.14065879331273	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: