YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC757.03c
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC757.03c.

Description	E-value	Query Range	Subject Range
gi\|25309714 - pir\|\|E95867 conserved hypothetical protein [imported] - Sinorhizobium meliloti (strain 1021) magapla... gi\|16263953, gi\|... - gi\|16263953\|ref\|NP_436745.1\| hypothetical protein SM_b20212 [Sinorhizobium meliloti 1021], gi\|151400...	191.0	[0..3]	[238..1]
gi\|82742353, gi\|... - gi\|82742353\|ref\|ZP_00905049.1\| NonF-related protein [Shewanella sp. W3-18-1], gi\|82720311\|gb\|EAP5518... gi\|124545881, gi... - gi\|124545881\|ref\|ZP_01705031.1\| ThiJ/PfpI [Shewanella putrefaciens 200], gi\|124510484\|gb\|EAY54553.1\|...	189.0	[0..3]	[241..1]
gi\|68521144, gi\|... - gi\|68541255\|ref\|ZP_00581001.1\| ThiJ/PfpI [Shewanella baltica OS155], gi\|68521144\|gb\|EAN44642.1\| ThiJ...	189.0	[0..1]	[241..1]
gi\|113908466, gi... - gi\|160873396\|ref\|YP_001552712.1\| ThiJ/PfpI domain-containing protein [Shewanella baltica OS195], gi\|...	187.0	[0..3]	[241..1]
gi\|150376058, gi... - gi\|150376058\|ref\|YP_001312654.1\| ThiJ/PfpI domain-containing protein [Sinorhizobium medicae WSM419],...	185.0	[0..6]	[238..2]
gi\|146291483, gi... - gi\|77816416\|ref\|ZP_00815606.1\| ThiJ/PfpI [Shewanella putrefaciens CN-32], gi\|77808622\|gb\|EAO93051.1\|...	185.0	[0..3]	[241..1]
gi\|86285369, gi\|... - gi\|86361267\|ref\|YP_473154.1\| hypothetical protein RHE_PF00538 [Rhizobium etli CFN 42], gi\|86285369\|g...	183.0	[0..4]	[239..1]
gi\|58580720, gi\|... - gi\|58580720\|ref\|YP_199736.1\| NonF-related protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	183.0	[0..6]	[239..29]
gi\|77458457, gi\|... - gi\|77458457\|ref\|YP_347962.1\| ThiJ/PfpI [Pseudomonas fluorescens Pf0-1], gi\|77382460\|gb\|ABA73973.1\| p...	182.0	[0..6]	[239..2]
gi\|89891505, gi\|... - gi\|89891505\|ref\|ZP_01203010.1\| ThiJ/PfpI family protein [Flavobacteria bacterium BBFL7], gi\|89516279...	181.0	[0..2]	[238..39]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEGKVLLV ASSYYGPFYP DGMNTGVHFA ELLIPYQVFR EAGYEVQLTS ETGKCKFDDH  60
   61 SIKKSALGEV ERDAFDNKDN EFWYALKDIK PADKINYKEF CIMFIAGGHA AMFDLPHATN 120
  121 LQTLAQQIYA SNGVLAAVCH GPVMLPFVDD TKSPEGRSVV YGKKVTAFNS TGELVMGVSS 180
  181 ALRERNMQDL NSLFREAGAE FVDPPTPMSD FTQVDGRIVT GVNPMSAKST AEAAIKVSQS 240
  241 LRKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1qvvA
Description:	Crystal structure of the S. cerevisiae YDR533c protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.761311388604334	bayes_pls_golite062009
binding	0.674707430307546	bayes_pls_golite062009
ligase activity	0.314215307503825	bayes_pls_golite062009
hydrolase activity	0.132707384514464	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: