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View Structure Prediction Details

Protein: rad60
Organism: Schizosaccharomyces pombe
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad60.

Description E-value Query
Range
Subject
Range
gi|90302145, gi|... - gi|90302145|gb|EAS31776.1| hypothetical protein CIMG_07255 [Coccidioides immitis RS], gi|119185074|r...
58.0 [0..134] [405..112]
gi|114189964, gi... - gi|115400870|ref|XP_001216023.1| predicted protein [Aspergillus terreus NIH2624], gi|114189964|gb|EA...
53.0 [0..181] [405..139]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLDEDDLA FFSKPIKKPP LNYAKQLIAS SSDSEEESEL DTNKQALEHI NAQKNITHNE  60
   61 NKSAEPLSRQ STILDADEGN QDVSDTTPNA CLNEGRHSPK SAISCVTQPV SPVYNTRAAA 120
  121 NLRNNSINSE AALSTTSSLL DDDFARRLEE IDRQVQEFEK SSSDMDVQIH THKREIEEDD 180
  181 DNTSADVPLL KHSKSDHSTL YHSKSEFSTN EPVISVVLQL AVIGQRIPNS NISLPRDWE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [240-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APLFFKVKSN QQFRRVRIAY SERKKVDNVV LVFQNQRLWD YGTPKGAGML KVDTRLVVHA  60
   61 YCHSDFISLK RIKELEVEKL SSVTEDSTAQ TCKLITLLLR SSKSEDLRLS IPVDFTVKDL 120
  121 IKRYCTEVKI SFHERIRLEF EGEWLDPNDQ VQSTELEDED QVSVVLD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.89
Match: 1a5rA
Description: STRUCTURE DETERMINATION OF THE SMALL UBIQUITIN-RELATED MODIFIER SUMO-1, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.11588141989606 bayes_pls_golite062009
protein binding 1.47732819196717 bayes_pls_golite062009
nucleic acid binding 1.00159394999838 bayes_pls_golite062009
transcription regulator activity 0.893208558353811 bayes_pls_golite062009
DNA binding 0.728116087736496 bayes_pls_golite062009
structure-specific DNA binding 0.0203697312404174 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle