YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC736.09c
Organism:	Schizosaccharomyces pombe
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC736.09c.

Description	E-value	Query Range	Subject Range
gi\|46135741, gi\|... - gi\|46135741\|ref\|XP_389562.1\| hypothetical protein FG09386.1 [Gibberella zeae PH-1], gi\|42554535\|gb\|E...	244.0	[0..5]	[223..34]
gi\|74095925, gi\|... - gi\|74095925\|ref\|NP_001027792.1\| translin associated factor X [Takifugu rubripes], gi\|24459912\|emb\|CA...	243.0	[0..3]	[212..31]
gi\|109019979 - gi\|109019979\|ref\|XP_001104647.1\| PREDICTED: similar to translin-associated factor X isoform 2 [Macac...	239.0	[0..4]	[212..38]
TSNAX_MACFA - Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1	239.0	[0..4]	[212..38]
TSNAX - translin-associated factor X TSNAX_PONPY - Translin-associated protein X - Pongo pygmaeus (Orangutan) TSNAX_PONAB - Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1	239.0	[0..4]	[212..38]
gi\|47229039 - gi\|47229039\|emb\|CAG09554.1\| unnamed protein product [Tetraodon nigroviridis]	239.0	[0..3]	[212..32]
TSNAX_RAT - Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1	238.0	[0..4]	[212..38]
gi\|114573227 - gi\|114573227\|ref\|XP_514271.2\| PREDICTED: translin-associated factor X [Pan troglodytes]	238.0	[0..4]	[212..38]
TSNAX_MOUSE - Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1	237.0	[0..4]	[212..38]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEFLSFKN FLQEDQDKRE KIIRLSREIT IQSKRMIFLL HQTSSSDGFP LPKDFDRTSI  60
   61 FEKKIHKELE SLKRELAGLN ADKFSSACTH GLQEYVEAVT FKFWLQTGTL LSCKDSSFRI 120
  121 SINFIDYVLG VCDMTGEIMR FLVTNGSKFS VQQLTQQVKF LRGLHKNCSE IEHLPSKVKS 180
  181 ELQQKLSVME NSISKVEGIC YSKILREADK RYLNLEVDTA TPPEEKRLRS T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1keyA
Description:	Testis/brain RNA-binding protein (TB-RBP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.18404838488611	bayes_pls_golite062009
nucleic acid binding	0.73934887642972	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: