YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17H9.04c
Organism:	Schizosaccharomyces pombe
Length:	604 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17H9.04c.

Description	E-value	Query Range	Subject Range
gi\|83771218 - gi\|83771218\|dbj\|BAE61350.1\| unnamed protein product [Aspergillus oryzae] gi\|169776033 - gi\|169776033\|ref\|XP_001822483.1\| hypothetical protein [Aspergillus oryzae RIB40]	224.0	[0..1]	[559..1]
gi\|49117290, gi\|... - gi\|67902136\|ref\|XP_681324.1\| hypothetical protein AN8055.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	222.0	[0..1]	[562..1]
gi\|66845754, gi\|... - gi\|70985240\|ref\|XP_748126.1\| RNA binding protein (Arp) [Aspergillus fumigatus Af293], gi\|66845754\|gb... gi\|159125951 - gi\|159125951\|gb\|EDP51067.1\| RNA binding protein (Arp), putative [Aspergillus fumigatus A1163]	220.0	[0..1]	[550..1]
gi\|38111383, gi\|... - gi\|39972023\|ref\|XP_367402.1\| hypothetical protein MG07327.4 [Magnaporthe grisea 70-15], gb\|EAA56972....	220.0	[0..5]	[562..3]
gi\|28949923, gi\|... - gi\|32412980\|ref\|XP_326970.1\| hypothetical protein [Neurospora crassa], gi\|28949923\|emb\|CAD70909.1\| r... gi\|85100635 - gi\|85100635\|ref\|XP_960999.1\| hypothetical protein NCU06684 [Neurospora crassa OR74A]	216.0	[0..1]	[563..1]
gi\|115437370, gi... - gi\|115437370\|ref\|XP_001217793.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	214.0	[0..5]	[555..4]
gi\|240109426 - gi\|240109426\|gb\|EER27595.1\| Zn-finger in Ran binding protein and others domain containing protein [C... gi\|119182868, gi... - gi\|90301322\|gb\|EAS30953.1\| hypothetical protein CIMG_06432 [Coccidioides immitis RS], gi\|119182868\|r...	213.0	[0..2]	[562..3]
gi\|116199179, gi... - gi\|88179024\|gb\|EAQ86492.1\| hypothetical protein CHGG_07745 [Chaetomium globosum CBS 148.51], gi\|1161...	208.0	[0..1]	[563..1]
gi\|111056069 - gi\|111056069\|gb\|EAT77189.1\| hypothetical protein SNOG_15524 [Phaeosphaeria nodorum SN15]	208.0	[0..1]	[556..1]
gi\|73976775 - gi\|73976775\|ref\|XP_539581.2\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	180.0	[0..92]	[559..44]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLPSPTMP LPESVGDLVV LHFETNLDDH GISIGRAPCE IHEICWVILD GKTLEKQHCE  60
   61 SCSIREDSSR HGICGSASSL TEAIFTLDNS IQERLNFQGK PFTFVVMNGR ELRVLLPKEA 120
  121 RDQGITLPSY MRHPRLFDLS SEYAKWQIRM GAVPPYTITL SHIFGKLDVD SLPPITESKA 180
  181 IELSPSDAPY ITKGLTQCWR LANATTLLLR KAEKDSRGHS LPSVLTQPIN CQADARSFYA 240
  241 ERSKIVHVAG LTNDVTQLEL ESWFTNHGVH PVALWTLKTP EPYKSTGTGF VLFASHEDAA 300
  301 DALAFNGYCL GDRMLEIIPS STKVLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.221849
Match:	2ghpA
Description:	No description for 2ghpA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.26550630643712	bayes_pls_golite062009
nucleic acid binding	2.02897811404491	bayes_pls_golite062009
RNA binding	1.45577328897026	bayes_pls_golite062009
mRNA binding	0.274978159646657	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [327-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KASDILIPFP SSKNRPRPGD WNCPMCGFSN FQRRTSCFRC SFPGPTHVSA ATGSNTFSPD  60
   61 FPYGNSYGNG SSHFIANYGG SVHHSNENTM QSDLQHQNGN NAVNHHHSSR SFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	1pgzA
Description:	Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.26550630643712	bayes_pls_golite062009
nucleic acid binding	2.02897811404491	bayes_pls_golite062009
RNA binding	1.45577328897026	bayes_pls_golite062009
mRNA binding	0.274978159646657	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [440-604]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNVPFRAGDW KCGSEGCGYH NFAKNVCCLR CGASRATAAV VADHASGPVN GSYSHNSYSH  60
   61 IPPVMSTSPP NHSVYPYSQL SINSVTANHG QNFGGQNGGN VSRFDDHGRF KEVSRPSVTT 120
  121 DQGDWLCECG FTNFRRRSNC LRCNAPHYSN MQIPASLPSD FNAYV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.28
Match:	1w7pD
Description:	ESCRT-II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: