YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC26H5.03
Organism:	Schizosaccharomyces pombe
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC26H5.03.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	435.0	[0..2]	[509..1198]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	413.0	[0..2]	[509..1070]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	402.0	[0..3]	[509..933]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	399.0	[0..3]	[509..592]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	391.0	[0..3]	[509..185]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	389.0	[0..3]	[508..675]

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Predicted Domain #1

Region A:
Residues: [1-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAEVLQIRW HYDANDDHTP IYSVDFQKNS LNKFATCGGD SKIRIWQLIT SESSTKVEYL  60
   61 STLSRHTQAV NVVRFNPEGN ILATAGDEGT IMLWVPTNTP ITTLADDAEE LALAKEYWKV 120
  121 KIVCRSMGSE IYDLCWSVDS NFLIAGAMDN SLRLYDAHTG QLLTQKFDHS HYVQGVCWDP 180
  181 LNQYIVSESS DRSICLYEIQ EEKKNPKKFQ LVLKSRICRI EYNVTKFELI SVTKPLNNDE 240
  241 SSGISEPIET SNNNESPVSK HEALSSTANI VKDGSLERTE PPNSLNSKIS YSLYCNETLV 300
  301 SFFRRPAFSP DGLLLVTPAG RLRPHGQPNF EVPYTAYIYT RGSITKQPVA CLNGFKKPVI 360
  361 AVRFSPIHYE LNSFSNFSFT SVSFNLPYRM VFAVACQDAV YIYDTQTCKP FYRAVNLHYS 420
  421 NLTDIAWNDD GNVLLMTSID GFCSVITFEP GELGVKSQHK ISLPEKRSAS PSSIDDSQDN 480
  481 TAGGPATTTL IPRKVESSKV SKKRIAPTPV YP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.2778252170547	bayes_pls_golite062009
protein binding	1.24173112731149	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.22384651674093	bayes_pls_golite062009
cytoskeletal protein binding	1.19593750149343	bayes_pls_golite062009
	0.92526678064403	bayes_pls_golite062009
transcription cofactor activity	0.90664265656758	bayes_pls_golite062009
histone binding	0.685319917508843	bayes_pls_golite062009
actin binding	0.529861581509437	bayes_pls_golite062009
DNA-dependent ATPase activity	0.485054404024611	bayes_pls_golite062009
transcription corepressor activity	0.412354662535711	bayes_pls_golite062009
chromatin binding	0.145491963066342	bayes_pls_golite062009
transcription regulator activity	0.0515743510044684	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: