YRC Public Data Repository - Protein Structure Prediction

Protein:	ykt6
Organism:	Schizosaccharomyces pombe
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ykt6.

Description	E-value	Query Range	Subject Range
YKT6_ASHGO - Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1 YKT6_ASHGO - Synaptobrevin homolog YKT6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1...	222.0	[0..1]	[196..1]
gi\|46124033, gi\|... - gi\|46124033\|ref\|XP_386570.1\| hypothetical protein FG06394.1 [Gibberella zeae PH-1], gi\|42551755\|gb\|E...	221.0	[0..1]	[196..1]
YKT6 - Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and wit... gi\|151941723 - gi\|151941723\|gb\|EDN60084.1\| v-SNARE [Saccharomyces cerevisiae YJM789] gi\|190409647 - gi\|190409647\|gb\|EDV12912.1\| hypothetical protein SCRG_03832 [Saccharomyces cerevisiae RM11-1a] ORFP:14223 - YKL196C, Contig c319 75707-76309 gi\|207343688 - gi\|207343688\|gb\|EDZ71077.1\| YKL196Cp-like protein [Saccharomyces cerevisiae AWRI1631] YKT6_YEAST - Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKT6 PE=1 SV=...	221.0	[0..1]	[196..1]
gi\|25395867 - gi\|25395867\|pir\|\|E88504 protein B0361.8 [imported] - Caenorhabditis elegans	218.0	[0..1]	[194..519]
gi\|35187452 - gi\|35187452\|gb\|AAQ84317.1\| fiber NTGP1-related protein [Gossypium barbadense]	215.0	[0..1]	[196..1]
gi\|85091642 - gi\|85091642\|ref\|XP_959001.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28920397, gi\|... - gi\|32421843\|ref\|XP_331365.1\| hypothetical protein [Neurospora crassa], gi\|28920397\|gb\|EAA29765.1\| hy...	214.0	[0..1]	[196..191]
gi\|25349719, gi\|... - gi\|3859707\|emb\|CAA21982.1\| probable snare protein [Candida albicans], pir\|\|T52162 probable snare pro... gi\|68469373, gi\|... - gi\|68469373\|ref\|XP_721201.1\| hypothetical protein CaO19.10491 [Candida albicans SC5314], gi\|68468829... gi\|238879237 - gi\|238879237\|gb\|EEQ42875.1\| hypothetical protein CAWG_01098 [Candida albicans WO-1]	214.0	[0..1]	[196..1]
gi\|4097579 - gi\|4097579\|gb\|AAD00116.1\| NTGP1 [Nicotiana tabacum]	214.0	[0..1]	[196..1]
YKT6_DEBHA - Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1 YKT6_DEBHA - Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0...	214.0	[0..1]	[196..1]
YKT6_YARLI - Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1 YKT6_YARLI - Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YKT6 PE=3 SV=1	213.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYSVSILR FDPKPVQLLC TASDLSSFSF FQRSSIGEFM NFFTKTVAER TNPGQRQDVE  60
   61 QSNYVFHVYN RSDGLCGVIA SDKEYPLRVA YTLLNKILDE FLTKNPRTKW ESGAVTLSFP 120
  121 ELDTYLSKYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1h8mA
Description:	Synaptobrevin homolog 1 ykt6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-cysteine S-acyltransferase activity	5.70902768432932	bayes_pls_golite062009
protein-cysteine S-palmitoleyltransferase activity	5.70902768432932	bayes_pls_golite062009
S-acyltransferase activity	2.42277624456482	bayes_pls_golite062009
palmitoyltransferase activity	2.39665981402803	bayes_pls_golite062009
SNAP receptor activity	2.23518960752054	bayes_pls_golite062009
clathrin binding	2.03985651011974	bayes_pls_golite062009
binding	1.76450203501026	bayes_pls_golite062009
transporter activity	1.71943098913274	bayes_pls_golite062009
substrate-specific transporter activity	0.939682472116899	bayes_pls_golite062009
hydrolase activity	0.815544630085919	bayes_pls_golite062009
signal recognition particle binding	0.66489873553532	bayes_pls_golite062009
protein binding	0.590936503990514	bayes_pls_golite062009
protein transporter activity	0.17469233791907	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.131410992694836	bayes_pls_golite062009
pyrophosphatase activity	0.0936690070284361	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0846345824909659	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0820309452260982	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [131-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKQADTIMR VQQELDETKD VLHKTIESVL ARGEKLDDLI QRSDNLSTQS RMFYKSAKKQ  60
   61 NSCCIIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1kilA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: