| Protein: | SPAC24C9.11 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 775 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC24C9.11.
| Description | E-value | Query Range |
Subject Range |
|
|
514.0 | [0..116] | [775..9] |
|
|
506.0 | [0..7] | [763..27] |
|
|
494.0 | [0..117] | [775..9] |
|
|
492.0 | [0..115] | [775..5] |
|
|
491.0 | [0..178] | [775..50] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MRPIKKSRSL KLPKSILEEI GESDSSARRG KRNHNLPHRE KRKFARISRG KNGYENRKIT 60
61 EEGDSKSSEL NDDYLDAHRK SSTKKKSSQN KQAKESKLLD PIAFQHKIAL EEDDREIAHL 120
121 EKMLGIKSKD KSAHS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-222] |
1 11 21 31 41 51
| | | | | |
1 KIDKEFGWLL EDLDQEIDDI GVPGTEDPSY GHSEDSEVSD DTGDHGSVDE LESEREGNSG 60
61 EEEEEFHGFE SNSDEFHQPE TKPIRMD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [223-489] |
1 11 21 31 41 51
| | | | | |
1 PLKPAVPSLP NANVGSKYVP PSLRKKLGGD KESEDALRLR RKLQGSLNKL SIANISSIIK 60
61 EIEVLYMENS RHSVTSTITN LLLQTVMGRE SMLDQLAIVY AALATALYRI VGNDFGAHLL 120
121 QTLVERFLQL YKSKEKEPLS SHKETSNLIV FFVELYNFQL VSCVLVYDLI RLFLRSLTEL 180
181 NVEMLLKIVL NCGGQLRSDD PTSLQDIVTE MNLLLASADP STISVRTKFM VESITNLKEN 240
241 KKTKVANASA QSKFEAVNQL KKFLGSL
|
| Detection Method: | |
| Confidence: | 46.522879 |
| Match: | 1hu3A |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| nucleic acid binding | 1.72695422276859 | bayes_pls_golite062009 |
| structural molecule activity | 1.66077840765881 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| transcription regulator activity | 0.821718728559452 | bayes_pls_golite062009 |
| DNA binding | 0.797151158461249 | bayes_pls_golite062009 |
| translation regulator activity | 0.557943239197724 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.531544577163632 | bayes_pls_golite062009 |
| RNA binding | 0.40024158562931 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.136474994339929 | bayes_pls_golite062009 |
| transcription factor activity | 0.123371336741999 | bayes_pls_golite062009 |
|
Region A: Residues: [490-775] |
1 11 21 31 41 51
| | | | | |
1 GNRSLNAREP LRVTLEDIEQ IETKGRWWLV GASWNNVPSG DNTLSTEALQ DKKKSEELTA 60
61 HSKILQAAKK LRLNSTLRTS IFVALVGSED YIDAWERVLK LHLKRNQLPE IAYVILHCVG 120
121 NEKLYNPFYG LVALKCCTLQ HNLKKSFQFS LWDFFNELQP DDDSEEREIS MRRIVNLAKL 180
181 YASLVIEAAQ PLTILKHVDF MAINAQMQTF LLVFFTDIIL GVKDDLQLVK IFENCKAEKN 240
241 LSSKVDWFLK TYVRKNPLVD NSKKALFKSN LAMASAILQS ISKEEI
|
| Detection Method: | |
| Confidence: | 1.78 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| nucleic acid binding | 1.67566088591721 | bayes_pls_golite062009 |
| structural molecule activity | 1.66038601649515 | bayes_pls_golite062009 |
| protein binding | 0.914877292844892 | bayes_pls_golite062009 |
| transcription regulator activity | 0.845665181662967 | bayes_pls_golite062009 |
| DNA binding | 0.806448013051712 | bayes_pls_golite062009 |
| translation regulator activity | 0.378889783888265 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.348192604482187 | bayes_pls_golite062009 |
| RNA binding | 0.243875756041061 | bayes_pls_golite062009 |
| transcription factor activity | 0.131703572961748 | bayes_pls_golite062009 |
