YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1782.06c
Organism:	Schizosaccharomyces pombe
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1782.06c.

Description	E-value	Query Range	Subject Range
gi\|33286931, gi\|... - gi\|41351079\|gb\|AAH65895.1\| Phb protein [Danio rerio], gi\|41152028\|ref\|NP_958454.1\| prohibitin [Danio...	230.0	[0..1]	[269..1]
gi\|149053617, gi... - gi\|62656822\|ref\|XP_220756.3\| PREDICTED: similar to prohibitin [Rattus norvegicus], gi\|157786666\|ref\|...	228.0	[0..2]	[277..3]
PHB_CHICK - Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1	225.0	[0..2]	[269..3]
gi\|89272030, gi\|... - gi\|89272810\|emb\|CAJ82042.1\| prohibitin [Xenopus tropicalis], gi\|89272030\|emb\|CAJ83243.1\| prohibitin ...	224.0	[0..2]	[269..3]
gi\|74181431, gi\|... - gi\|74185218\|dbj\|BAE30089.1\| unnamed protein product [Mus musculus], gi\|74181431\|dbj\|BAE29988.1\| unna...	222.0	[0..2]	[269..3]
gi\|61362617, gi\|... - gi\|61362624\|gb\|AAX42254.1\| prohibitin [synthetic construct], gi\|61362617\|gb\|AAX42253.1\| prohibitin [... HGNC:8912\|MIM:17... - null PHB - prohibitin PHB_BOVIN - Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1 gi\|158906128, gi... - gi\|160333845\|ref\|NP_001103918.1\| prohibitin [Felis catus], gi\|158906128\|gb\|ABW82705.1\| prohibitin [F... gi\|158442066, gi... - gi\|158819069\|ref\|NP_001103649.1\| prohibitin [Canis lupus familiaris], gi\|158442066\|gb\|ABW38778.1\| pr... gi\|109114258, gi... - gi\|109114260\|ref\|XP_001093569.1\| PREDICTED: similar to prohibitin isoform 7 [Macaca mulatta], gi\|109... ENSCJAT00000014086 - null gi\|114666273, gi... - gi\|55646807\|ref\|XP_511949.1\| PREDICTED: prohibitin isoform 7 [Pan troglodytes], gi\|114666277\|ref\|XP_...	221.0	[0..2]	[269..3]
gi\|60829530 - gi\|60829530\|gb\|AAX36882.1\| prohibitin [synthetic construct]	220.0	[0..2]	[269..3]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVLERVAR YAIPIGIGFT LLQSSIYDVP GGKRAVLFDR LSGVQKQVVQ EGTHFLIPWL  60
   61 QKAIVYDVRT RPRNIATTTG SKDLQMVSLT LRVLHRPEVG MLPQIYQNLG LDYDERVLPS 120
  121 IGNEILKSVV AQFDAAELIT QREVVSAKIR QELVQRATEF GIRLEDVSIT HMTFGKEFTK 180
  181 AVERKQIAQQ EAERARFLVE QSEQERQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	1winA
Description:	Solution Structure of the Band 7 Domain of the mouse Flotillin 2 Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10215477176861	bayes_pls_golite062009
protein binding	0.769979871341236	bayes_pls_golite062009
structural molecule activity	0.591437172549816	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [209-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVIRAEGEAE AADIVSKALD KAGGALIQIR RLETSKEVAT ALANKGAQVT YLPFGAGSNA  60
   61 QSSSGSGLLL NVNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: