YRC Public Data Repository - Protein Structure Prediction

Protein:	uep1, ubi1
Organism:	Schizosaccharomyces pombe
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uep1, ubi1.

Description	E-value	Query Range	Subject Range
gi\|114676157 - gi\|114676157\|ref\|XP_001135183.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	190.0	[0..1]	[128..94]
gi\|70990606, gi\|... - gi\|70990606\|ref\|XP_750152.1\| ubiquitin (UbiA), putative [Aspergillus fumigatus Af293], gi\|66847784\|g...	185.0	[0..1]	[128..97]
gi\|114193911, gi... - gi\|115390965\|ref\|XP_001212987.1\| 60S ribosomal protein L40 [Aspergillus terreus NIH2624], gi\|1141939...	185.0	[0..4]	[128..298]
gi\|73986078 - gi\|73986078\|ref\|XP_533870.2\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusion p...	185.0	[0..1]	[128..59]
gi\|109124042 - gi\|109124042\|ref\|XP_001115463.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	178.0	[0..1]	[128..49]
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	172.0	[0..1]	[127..171]
gi\|39725569 - gi\|39725569\|dbj\|BAD04937.1\| poryprotein [Bovine viral diarrhea virus 190cp]	172.0	[0..1]	[128..1946]
gi\|13569612 - gi\|13569612\|gb\|AAK31162.1\| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]	172.0	[0..1]	[128..14]
gi\|39725571 - gi\|39725571\|dbj\|BAD04938.1\| poryprotein [Bovine viral diarrhea virus T-20]	172.0	[0..1]	[128..1464]
gi\|567767 - gi\|567767\|gb\|AAA53067.1\| p125 protein	171.0	[0..1]	[127..347]

Back

Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2ojrA
Description:	No description for 2ojrA was found.

Predicted Domain #2

Region A:
Residues: [74-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGGIIEPSLK ALASKYNCEK QICRKCYARL PPRATNCRKK KCGHTNQLRP KKKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.91
Match:	2ayjA
Description:	No description for 2ayjA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.67761199764219	bayes_pls_golite062009
structural molecule activity	9.13063837111868	bayes_pls_golite062009
binding	1.81525505623128	bayes_pls_golite062009
protein binding	1.39181618480952	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: