| Protein: | ell1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 533 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ell1.
| Description | E-value | Query Range |
Subject Range |
|
|
268.0 | [0..92] | [530..93] |
|
|
263.0 | [0..92] | [530..109] |
|
|
255.0 | [0..85] | [531..93] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MIRNSSISDA LPVALGGNEE ESPLLMLVQL PKEFLEGYLS GTITDVSLEC SDVGTSILAN 60
61 DRSYKCTSVP ETAPHEIYRL VDSNSLQLVG RVSQKLQLRR ELDSLTAERV KNRTQEAQKE 120
121 KEEKRIVTLQ NDGGSKNTTA RKQKQLKKNG LRPLNTSASR IGLSSSPTNT PS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [173-283] |
1 11 21 31 41 51
| | | | | |
1 PNLPVSQPSA SPHYSGDKNS AKGIDLRTRV IQLLAIAPET EDFLRLRTKA SLSKLQALLP 60
61 EVAWKNNMNQ WELLNPVYKD VRVFDWRPYS IADRNAVLSR MSNAFDNMQL P
|
| Detection Method: | |
| Confidence: | 21.30103 |
| Match: | 2doaA |
| Description: | No description for 2doaA was found. |
| Term | Confidence | Notes |
| transcription elongation regulator activity | 5.57922584114465 | bayes_pls_golite062009 |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription activator activity | 3.70589483230587 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.58179858678904 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| RNA polymerase II transcription elongation factor activity | 2.38180543580617 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.13524243942225 | bayes_pls_golite062009 |
|
Region A: Residues: [284-533] |
1 11 21 31 41 51
| | | | | |
1 PDAPERSLLV SKQKNITKLN NEKRIPPQLA QPTSHVPSFI DTNSPSMPSI SSVSSYQQQH 60
61 RIPKLNASNY SPLLSPSSHR KTSGNLSRTG SESSAVSLSD TTNLNTPISD IPSPGSSTTC 120
121 SNLSSPHIKR KSRSPPQSLP STPFPTSSSS TNGTLEPNAN SPKKNEQDAW IAKKRRQQRY 180
181 TTEEMRALAK RFRETYPRYK NLYLKVSSYY DNNDTNNPNL NKLQDELISL HSQLKSWKNT 240
241 LYDASSELAL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
