YRC Public Data Repository - Protein Structure Prediction

Protein:	nta1
Organism:	Schizosaccharomyces pombe
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nta1.

Description	E-value	Query Range	Subject Range
gi\|21647505, gi\|... - gi\|21674330\|ref\|NP_662395.1\| carbon-nitrogen hydrolase family protein [Chlorobium tepidum TLS], gi\|2...	204.0	[0..1]	[285..6]
gi\|67918649, gi\|... - gi\|67918649\|ref\|ZP_00512244.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	199.0	[0..1]	[286..6]
gi\|67935681, gi\|... - gi\|67935681\|ref\|ZP_00528700.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	199.0	[0..1]	[285..71]
gi\|194308610, gi... - gi\|68551060\|ref\|ZP_00590489.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pel...	198.0	[0..3]	[286..8]
gi\|68240182, gi\|... - gi\|68552893\|ref\|ZP_00592277.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pro...	197.0	[0..1]	[285..6]
gi\|114320600, gi... - gi\|78700084\|ref\|ZP_00864541.1\| glycosyl hydrolase, family 10 [Alkalilimnicola ehrlichei MLHE-1], gi\|...	197.0	[0..1]	[285..4]
gi\|5458817, gi\|7... - pir\|\|C75051 hydrolase related PAB1449 - Pyrococcus abyssi (strain Orsay), gi\|5458817\|emb\|CAB50304.1\|... NITR_PYRAB - Nitrilase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB13990 PE=1 SV=1	196.0	[0..1]	[285..2]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	196.0	[0..2]	[285..433]
gi\|94968968, gi\|... - gi\|94968968\|ref\|YP_591016.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Candi...	195.0	[0..2]	[285..7]
gi\|189500660, gi... - gi\|67938126\|ref\|ZP_00530655.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	194.0	[0..1]	[285..5]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGCVQFFP KLGKVNENIV HLRQLLDQHS EALQSVKLLV FPEMCLTGYN FKNSESIQPF  60
   61 LENVTSNHCP SIQFAQEVSE QYRCYTIIGF PEFQNSNGIS TLYNSTALIS PKKELLNVYH 120
  121 KHFLFETDKS WATEGKGFSF EPCIPELGPI SMAICMDINP YDFKAPFEKF EYANFILREL 180
  181 EHQQMVSSNV SRPIICLSMA WLVSDDKVID ASLPDIKNLH YWTTRLSPLI NSNTDAIVLV 240
  241 ANRWGKENDL NFSGTSCIME LSQGRAILHG VLKAAENGIV VGELEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	1j31A
Description:	Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.8930848757764	bayes_pls_golite062009
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
binding	1.19055167016953	bayes_pls_golite062009
protein binding	0.360416829919237	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: