YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2E1P3.04
Organism:	Schizosaccharomyces pombe
Length:	712 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2E1P3.04.

Description	E-value	Query Range	Subject Range
gi\|38099617, gi\|... - gi\|39941804\|ref\|XP_360439.1\| hypothetical protein MG10751.4 [Magnaporthe grisea 70-15], gb\|EAA46940....	892.0	[0..23]	[712..4]
gi\|28921972, gi\|... - gi\|32409785\|ref\|XP_325373.1\| hypothetical protein [Neurospora crassa], gi\|28921972\|gb\|EAA31244.1\| pe... gi\|85097614 - gi\|85097614\|ref\|XP_960480.1\| peroxisomal copper amine oxidase [Neurospora crassa OR74A]	879.0	[0..20]	[699..6]
gi\|67901308, gi\|... - gi\|67901308\|ref\|XP_680910.1\| hypothetical protein AN7641.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	868.0	[0..17]	[685..14]
gi\|159126367 - gi\|159126367\|gb\|EDP51483.1\| peroxisomal copper amine oxidase [Aspergillus fumigatus A1163] gi\|66851534, gi\|... - gi\|70998352\|ref\|XP_753898.1\| peroxisomal copper amine oxidase [Aspergillus fumigatus Af293], gi\|6685...	858.0	[0..18]	[689..15]
gi\|114189575, gi... - gi\|115433172\|ref\|XP_001216723.1\| peroxisomal copper amine oxidase [Aspergillus terreus NIH2624], gi\|...	858.0	[0..9]	[691..6]
AMO_PICAN - Peroxisomal primary amine oxidase OS=Pichia angusta GN=AMO PE=1 SV=1 AMO_PICAN - Peroxisomal primary amine oxidase OS=Pichia angusta GN=AMO PE=1 SV=1	850.0	[0..24]	[705..23]
gi\|119182119, gi... - gi\|90300998\|gb\|EAS30629.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119182119\|re...	849.0	[0..20]	[674..17]
gi\|111056138 - gi\|111056138\|gb\|EAT77258.1\| hypothetical protein SNOG_15325 [Phaeosphaeria nodorum SN15]	847.0	[0..22]	[701..19]
gi\|169777409 - gi\|169777409\|ref\|XP_001823170.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771907 - gi\|83771907\|dbj\|BAE62037.1\| unnamed protein product [Aspergillus oryzae]	843.0	[0..17]	[697..14]
orf19.5784, orf1... - orf19.5784 CGDID:CAL0001538 Assembly 19, Contig19-10234 (16456, 14327) CDS, reverse complemented, tr... gi\|68481372, gi\|... - gi\|68481503\|ref\|XP_715260.1\| likely peroxisomal copper amine oxidase genes [Candida albicans SC5314]...	842.0	[0..15]	[705..14]

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Predicted Domain #1

Region A:
Residues: [1-712]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYYPHLPYH HHHHTSVPGE RLSDPLDPLS ADELKLAVEI IRHEYPSKHF AFNVVTLEEP  60
   61 PKAKYLHWKY SKEDAHKPER IALAVLLEKG VPGILEARVN LTKAEVIQIE HITGVCPILT 120
  121 ADMLVNTEQI VRKDPAVIEQ CILSGVPPDQ MDHVYCDPWT IGYDERYGNT RRMQQAMMYY 180
  181 RSNEDDSQYS HPLDFCPIID TEDQKVVAID IPPVRRPLSK HKHSNFNKKD IEAELGKMRE 240
  241 VKPISVTQPE GVNFRMKGRY IEWQNFRMHI GFNYREGIVL SDISYNDNGH IRPLFYRMSI 300
  301 AEMVVPYGNP EHPHQRKHAF DLGEYGAGYL TNPLALGCDC KGVIHYLDAH FVNNTGEVET 360
  361 VKNAICIHEE DDGVLFKHSD FRDKFRTTIS ARGIRLVISQ IFTAANYEYM VYWIFHMDGV 420
  421 IECELKLTGI LNTYAMNEGE DLKGWGTQVY PQVNAHNHQH LFCLRLNPML DGYSNSVAVV 480
  481 DGVSGPGEPG SKENYYGNAF TTERTVPKTV KEAICDYNSD TSRTWDICNP NKLHPYSGKP 540
  541 VSYKLVSRET PRLMARPGSL VSNRAGFARH HIHVTPYKDG QIYPAGDYVP QTSGEPTKGL 600
  601 PEWIAEEPDA SVDNTDIVVW HTFGITHFPA PEDFPLMPAE PIRLLLRPRN FFLRNPALDV 660
  661 PPSKNVTTSE VKQAHHHGNL HMMDMMKSLT DATSEFAFGE KFCEKHKGDH FF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ekmA
Description:	Copper amine oxidase, domain 3 (catalytic); Copper amine oxidase, domains 1 and 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
copper ion binding	1.78083444022234	bayes_pls_golite062009
binding	1.52650749686101	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.04273547518	bayes_pls_golite062009
cation binding	0.886809852927978	bayes_pls_golite062009
metal ion binding	0.886809852927978	bayes_pls_golite062009
ion binding	0.880849428582846	bayes_pls_golite062009
catalytic activity	0.672290280263588	bayes_pls_golite062009
transition metal ion binding	0.668245465199827	bayes_pls_golite062009
amine oxidase activity	0.454088447479247	bayes_pls_golite062009
protein binding	0.326999823218261	bayes_pls_golite062009
oxidoreductase activity	0.208879786598677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: