YRC Public Data Repository - Protein Structure Prediction

Protein:	arh1
Organism:	Schizosaccharomyces pombe
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arh1.

Description	E-value	Query Range	Subject Range
gi\|62391655, gi\|... - gi\|62391655\|ref\|YP_227057.1\| sulfite reductase (flavoprotein) [Corynebacterium glutamicum ATCC 13032...	212.0	[0..14]	[465..2]
gi\|25029148, gi\|... - gi\|25029148\|ref\|NP_739202.1\| putative ferredoxin/adrenodoxin reductase [Corynebacterium efficiens YS...	212.0	[0..7]	[466..19]
gi\|38234613 - gi\|38234613\|ref\|NP_940380.1\| putative ferredoxin/ferredoxin-NADP reductase [Corynebacterium diphther... gi\|38200877 - gi\|38200877\|emb\|CAE50582.1\| Putative ferredoxin/ferredoxin-NADP reductase [Corynebacterium diphtheri...	212.0	[0..14]	[464..2]
gi\|169774713 - gi\|169774713\|ref\|XP_001821824.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769687 - gi\|83769687\|dbj\|BAE59822.1\| unnamed protein product [Aspergillus oryzae]	204.0	[0..3]	[463..36]
MFDR_ARATH - NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Arabidopsis thaliana GN=MFDR PE=1 SV=1	203.0	[0..1]	[464..9]
gi\|47207051 - gi\|47207051\|emb\|CAG13365.1\| unnamed protein product [Tetraodon nigroviridis]	202.0	[0..14]	[464..27]
gi\|21219210, gi\|... - gi\|6425601\|emb\|CAB60462.1\| putative ferredoxin/ferredoxin-NADP reductase (putative secreted protein)...	201.0	[0..14]	[462..2]
gi\|111065821 - gi\|111065821\|gb\|EAT86941.1\| hypothetical protein SNOG_05877 [Phaeosphaeria nodorum SN15]	200.0	[0..14]	[464..85]
gi\|54027336, gi\|... - gi\|54027336\|ref\|YP_121578.1\| putative ferredoxin reductase [Nocardia farcinica IFM 10152], gi\|540188...	199.0	[0..10]	[468..8]

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Predicted Domain #1

Region A:
Residues: [1-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRFIKRTY STQTSSPVVG IIGSGPAAFY TAHRLLRNDP NVKIDMFESR PVPFGLVRYG  60
   61 VAPDHPEVKH VEHKFSEIAE STQFRFLGNV NVGTDVSLRD LTKNYDCLVL AYGAAGDKRL 120
  121 GIPGEDLSGV YSAREVVGWY NSDPRNQNLE LDLSQVEDAV VIGHGNVSLD VARILLSNPA 180
  181 QLSPTDINPL FLKSLERSNL KRLHIVGRRN IFSVSFTIKE LRELFALSSA VFFAPSFNYS 240
  241 TKWMNETDAS GLDRPRKRLL KLLVSEIQKA VSEKRVAPYS KDKKCWNLEF GLTPVEILGH 300
  301 KGNVENVRFQ ITDSIRTDAE SKFTTIPAQL FIRSIGYKSM PLPGMKDVGV PFDDAKGIVK 360
  361 NVNGFVRPGI YTSGWVKHGP IGVIATTMMD AFATADTITK DWKSKKEFLK NSKLGWDGLK 420
  421 KNIKTPVIHW KDWKVIRNAE IERGLRHESL SEKFRSNEDM IKLIYPGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1cjcA
Description:	Adrenodoxin reductase of mitochondrial p450 systems
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
NADPH-adrenodoxin reductase activity	5.80270482091908	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	4.45434904225178	bayes_pls_golite062009
oxidoreductase activity	2.10828870968712	bayes_pls_golite062009
antioxidant activity	1.49429830917872	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.39990343076756	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.29733355244701	bayes_pls_golite062009
catalytic activity	1.13824203225664	bayes_pls_golite062009
thioredoxin-disulfide reductase activity	0.844975371289313	bayes_pls_golite062009
binding	0.794954996246594	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.68737141906442	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.379282693663222	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	0.31095562417378	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	0.0706880697754912	bayes_pls_golite062009
protein binding	0.0171008177759692	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: