YRC Public Data Repository - Protein Structure Prediction

Protein:	dap1
Organism:	Schizosaccharomyces pombe
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dap1.

Description	E-value	Query Range	Subject Range
PGRC2_MOUSE - Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2	153.0	[0..1]	[166..49]
PGRC2_RAT - Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1	153.0	[0..1]	[166..49]
gi\|109075624 - gi\|109075624\|ref\|XP_001082791.1\| PREDICTED: similar to progesterone membrane binding protein [Macaca...	151.0	[0..1]	[166..79]
gi\|57100531 - gi\|57100531\|ref\|XP_533292.1\| PREDICTED: similar to progesterone membrane binding protein [Canis fami...	149.0	[0..1]	[166..55]
gi\|61859954 - gi\|61859954\|ref\|XP_613630.1\| PREDICTED: similar to progesterone membrane binding protein [Bos taurus...	144.0	[0..1]	[166..79]
gi\|123994037, gi... - gi\|124000713\|gb\|ABM87865.1\| progesterone receptor membrane component 2 [synthetic construct], gi\|124... PGRMC2 - progesterone receptor membrane component 2	142.0	[0..1]	[166..55]
gi\|114595991 - gi\|114595991\|ref\|XP_517434.2\| PREDICTED: similar to progresterone binding protein [Pan troglodytes]	142.0	[0..1]	[166..79]
gi\|49904307 - gi\|49904307\|gb\|AAH77054.1\| Pgrmc2 protein [Xenopus tropicalis]	141.0	[0..12]	[166..114]
gi\|185134138, gi... - gi\|25046107\|gb\|AAL49963.1\| progestin membrane receptor component 1 [Oncorhynchus mykiss], gi\|1851341...	141.0	[0..3]	[166..21]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTQVVFIV TLFLYLLITR WRRKNEKSFI ASEEPKQPEW RDYTPAELKE YNGSKNSLVF  60
   61 LAIKGTVYNV TMGSKFYGPQ GPYSAFAGHD ASRGLAKNSF DDEFIPDSDA EELDDCSDLN 120
  121 DEERQALNDW KAFFDQKYQA VGRLISPREA RAAATISETE EKVAHN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1j03A
Description:	Solution structure of a putative steroid-binding protein from Arabidopsis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.05227276400356	bayes_pls_golite062009
binding	0.187915229185258	bayes_pls_golite062009
steroid binding	0.177535173083536	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: