YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC365.01
Organism:	Schizosaccharomyces pombe
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC365.01.

Description	E-value	Query Range	Subject Range
gi\|32413367, gi\|... - gi\|32413367\|ref\|XP_327163.1\| hypothetical protein [Neurospora crassa], gi\|28920627\|gb\|EAA29988.1\| hy... gi\|85092095 - gi\|85092095\|ref\|XP_959224.1\| hypothetical protein [Neurospora crassa OR74A]	285.0	[0..6]	[351..278]
gi\|46127145, gi\|... - gi\|46127145\|ref\|XP_388126.1\| hypothetical protein FG07950.1 [Gibberella zeae PH-1], gi\|42553724\|gb\|E...	277.0	[0..3]	[352..264]
gi\|51971036 - gi\|51971036\|dbj\|BAD44210.1\| putative phosphatidylinositol/ phosphatidylcholine transfer protein [Ara...	276.0	[0..3]	[328..1]
gi\|7490748, gi\|1... - gi\|7490748\|pir\|\|T42377 hypothetical protein - fission yeast (Schizosaccharomyces pombe) (fragment), ...	275.0	[0..1]	[355..12]
gi\|14486705 - gi\|14486705\|gb\|AAK63247.1\|AF367433_1 phosphatidylinositol transfer-like protein III [Lotus japonicus...	269.0	[0..3]	[328..62]
gi\|102139892 - gi\|102139892\|gb\|ABF70041.1\| phosphatidylinositol transfer protein, putative [Musa acuminata]	267.0	[0..5]	[328..57]
gi\|41052607, gi\|... - gi\|50905075\|ref\|XP_464026.1\| putative hosphatidylinositol/phophatidylcholine transfer protein [Oryza... gi\|125537970 - gi\|125537970\|gb\|EAY84365.1\| hypothetical protein OsI_05740 [Oryza sativa Indica Group]	266.0	[0..17]	[341..74]
gi\|92870325 - gi\|92870325\|gb\|ABE79642.1\| Cellular retinaldehyde-binding/triple function, N-terminal [Medicago trun...	265.0	[0..3]	[328..62]

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Predicted Domain #1

Region A:
Residues: [1-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIPADRKK IVQEGWSRLF SDIEQPSYIQ KFPSQESLYV SFFEQCAFDD FDLTLLRFLK  60
   61 ARKFVVTDSS DMLANAIVWR QQANLRSIMV RGENGLNQNF VKASMYFIWG QDKKGRAIVF 120
  121 LNLHNFIPPK NTKDMEELKA LILYAMENAR LFLDSEQNAA KGVLGLVDLT YFSRKNIDLD 180
  181 FARVFAETFQ NYYPEILGQA LIVGSGFRMA LFEGVWSIGK YFLDPEVRSK VTFCKPAQVS 240
  241 GYVDSKYIPL SMHGQFDETK LYERAPPETA GIGKPENYEE LDKEYVDAAK EFIRLTREWI 300
  301 YAAGKPQEAE IEEKRKAFKY ECKKLWRKGV ALRPPNIYQR LGLIDANGHV DWSKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1o6uA
Description:	The Crystal Structure of Human Supernatant Protein Factor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phospholipid transporter activity	4.82372291869245	bayes_pls_golite062009
lipid transporter activity	3.44932625048477	bayes_pls_golite062009
phosphatidylinositol transporter activity	3.08477039249457	bayes_pls_golite062009
binding	2.35923633198634	bayes_pls_golite062009
substrate-specific transporter activity	0.658164745879483	bayes_pls_golite062009
protein binding	0.592567938703741	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: