YRC Public Data Repository - Protein Structure Prediction

Protein:	snz1
Organism:	Schizosaccharomyces pombe
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snz1.

Description	E-value	Query Range	Subject Range
PDX1_HEVBR - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1	429.0	[0..1]	[294..15]
NbS00025844g0001.1 - protein AED:0.00 eAED:0.00 QI:0\|-1\|0\|1\|-1\|1\|1\|0\|309; (*GB) gi\|46399269\|gb\|AAS92255.1\| (e_value=0.0) ... gi\|46399269, gi\|... - gi\|46399271\|gb\|AAS92256.1\| putative pyridoxine biosynthesis protein isoform B [Nicotiana tabacum], g...	427.0	[0..2]	[294..17]
gi\|72256517 - gi\|72256517\|gb\|AAZ67141.1\| pyridoxine biosynthesis protein [Lotus corniculatus var. japonicus]	426.0	[0..1]	[294..16]
PDXS_HERA2 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 7...	425.0	[0..5]	[296..2]
PDX13_ARATH - Pyridoxal 5'-phosphate synthase subunit PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2	425.0	[0..1]	[294..15]
PDX1_PHAVU - Pyridoxal 5'-phosphate synthase subunit PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1	424.0	[0..1]	[294..18]
gi\|88945698, gi\|... - gi\|88945698\|ref\|ZP_01148864.1\| Vitamin B6 biosynthesis protein [Desulfotomaculum reducens MI-1], gi\|...	424.0	[0..5]	[296..3]
PDXS_CHLAA - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 63... gi\|53797482 - ref\|ZP_00358278.1\| COG0214: Pyridoxine biosynthesis enzyme [Chloroflexus aurantiacus] PDXS_CHLSY - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 63...	422.0	[0..5]	[296..2]
gi\|92870196, gi\|... - gi\|92870196\|gb\|ABE79531.1\| Vitamin B6 biosynthesis protein [Medicago truncatula], gi\|72256515\|gb\|AAZ...	422.0	[0..8]	[294..27]
gi\|72256519 - gi\|72256519\|gb\|AAZ67142.1\| pyridoxine biosynthesis protein [Glycine max]	422.0	[0..1]	[294..17]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEIKGSTQ VKAGLAQMLK GGVIMDVVNA EQARIAEAAG ACAVMALERV PADIRAQGGV  60
   61 ARMSDPSMIK EIQAAVSIPV MAKVRIGHFV EAQILESIGV DYIDESEVLT PADDINHIEK 120
  121 SKFTVPFVCG SRNLGEALRR ISEGAAMIRT KGEAGTGDVV EAVRHTRQMQ GELRRVKSMS 180
  181 PDELYTYAKE IAAPIDLVKE CAQLGRLPVV NFAAGGVATP ADAALMMQLG CDGVFVGSGI 240
  241 FLSGDPAKRA RAIVRAVTHY NDPKILAEVS ENLGAAMVGR SVSSLEEKEK LATRGW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1znnA
Description:	Structure of the synthase subunit of PLP synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.44231061702877	bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity	1.56591581078504	bayes_pls_golite062009
binding	0.283052085721618	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.21095259308705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: