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View Structure Prediction Details

Protein: SPAC19A8.07c
Organism: Schizosaccharomyces pombe
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC19A8.07c.

Description E-value Query
Range
Subject
Range
gi|37654250 - gi|37654250|gb|AAQ96230.1| LRRGT00017 [Rattus norvegicus]
312.0 [0..12] [287..12]
IMP4_YARLI - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1
IMP4_YARLI - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) G...
308.0 [0..1] [285..1]
gi|49069886, gi|... - gi|71006196|ref|XP_757764.1| hypothetical protein UM01617.1 [Ustilago maydis 521], ref|XP_399232.1| ...
307.0 [0..1] [285..1]
gi|190409064 - gi|190409064|gb|EDV12329.1| U3 small nucleolar ribonucleoprotein protein IMP4 [Saccharomyces cerevis...
IMP4_YEAST - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...
gi|207341687 - gi|207341687|gb|EDZ69673.1| YNL075Wp-like protein [Saccharomyces cerevisiae AWRI1631]
IMP4 - Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10...
306.0 [0..1] [285..1]
gi|12850634, gi|... - gi|30519917|ref|NP_848716.1| U3 snoRNP protein 4 homolog [Mus musculus], gi|12850634|dbj|BAB28797.1|...
305.0 [0..12] [287..12]
IMP4_CANGA - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / ...
IMP4_CANGA - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1
304.0 [0..1] [285..1]
gi|66514411 - gi|66514411|ref|XP_395323.2| PREDICTED: similar to IMP4, U3 small nucleolar ribonucleoprotein, homol...
303.0 [0..1] [289..1]
IMP4_ASHGO - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51...
IMP4_ASHGO - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1
302.0 [0..1] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRAVRERR QFIYKRNQEL QEAKLNEKRR ALRKALEGNK ELNKDLQEDS QLQKDYKYDE  60
   61 SRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQEETETNLD DEYHRLGERE PKVLVTTSRE PSSRLAQFAK EVRLLIPNSY RLNRGNIVVG  60
   61 SLVEAARAND ITDIVILHEH RGIPDGLVIS HLPYGPTLSF SLHNVVLRHD I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.154902
Match: 2cxhA
Description: Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminoacyl-tRNA ligase activity 3.58650371779212 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 3.58624422951947 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 3.58624422951947 bayes_pls_golite062009
ligase activity 2.71574082295198 bayes_pls_golite062009
proline-tRNA ligase activity 2.35871952544841 bayes_pls_golite062009
binding 1.73857064375258 bayes_pls_golite062009
catalytic activity 0.902495165806215 bayes_pls_golite062009
protein binding 0.358563180490135 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [175-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNTGTMSEAY PHLIFENLTS KLGKRVKTAL SALFPPDPKD TTPRVVTFAN TDDYISFRHH  60
   61 IYAKTGPKQI ILSEAGPRFE MKLFEITLGT VDMVDADVEW KLKPYQRHKR DVLAE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.74
Match: 1w94A
Description: Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle