YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC20G4.05c
Organism:	Schizosaccharomyces pombe
Length:	568 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20G4.05c.

Description	E-value	Query Range	Subject Range
gi\|38105097, gi\|... - gi\|39942158\|ref\|XP_360616.1\| hypothetical protein MG03159.4 [Magnaporthe grisea 70-15], gb\|EAA51564....	654.0	[0..5]	[568..29]
gi\|115385943, gi... - gi\|115385943\|ref\|XP_001209518.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	649.0	[0..5]	[568..14]
gi\|42551231, gi\|... - gi\|46121637\|ref\|XP_385373.1\| hypothetical protein FG05197.1 [Gibberella zeae PH-1], gi\|42551231\|gb\|E...	644.0	[0..5]	[568..23]
gi\|85083763 - gi\|85083763\|ref\|XP_957181.1\| hypothetical protein ( hypothetical protein B17C10.170 [imported] - Neu... gi\|32415435, gi\|... - gi\|32415435\|ref\|XP_328197.1\| hypothetical protein ( hypothetical protein B17C10.170 [imported] - Neu...	633.0	[0..5]	[568..59]
gi\|16416091 - gi\|16416091\|emb\|CAB91237.2\| conserved hypothetical protein [Neurospora crassa] gi\|164428165, gi... - gi\|164428165\|ref\|XP_957181.2\| hypothetical protein NCU01758 [Neurospora crassa OR74A], gi\|157072037\|...	633.0	[0..5]	[568..22]
gi\|13430492 - gi\|13430492\|gb\|AAK25868.1\|AF360158_1 unknown protein [Arabidopsis thaliana]	628.0	[0..1]	[568..40]
gi\|24986851, gi\|... - gi\|26991744\|ref\|NP_747169.1\| hypothetical protein PP_5068 [Pseudomonas putida KT2440], gi\|24986851\|g...	627.0	[0..1]	[568..25]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKLKDLPV SSTFTSNLPP DPLVPTVQAM KKADDRILHV PRFVEGGGLF TYLTPSLKAN  60
   61 SQLLAYSPSS VKSLGLEESE TQTEAFQQLV VGSNVDVNKC CPWAQCYGGY QFGDWAGQLG 120
  121 DGRVVSLCEL TNPETGKRFE IQVKGAGRTP YSRFADGKAV LRSSIREYLC CEALYALGIP 180
  181 TT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QALAISNLEG VVAQRETVEP CAVVCRMAPS WIRIGTFDLQ GINNQIESLR KLADYCLNFV  60
   61 LKDGFHGGDT GNRYEKLLRD VAYRNAKTVA KWQAYGFMNG VLNTDNTSIL GLSIDYGPFG 120
  121 FLDVYN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [309-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFTPNHDDV FLRYSYRNQP DIIIWNLSKL ASALVELIGA CDKVDDLQYM EQLHNSTDLL  60
   61 KKAFAYTSEV FEKIVEEYKN IVQNDFYDLM FKRVGLPSDS SNKILITDLL QILEDYELDM 120
  121 PNCFSFLSRN SPSSMENEEY AAKLMQACIC LNPNNERVRN ESVKAFTNWV GRYSEATK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [487-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQEDSSRLAS MKKVNPHFTL RNWVLEEVIK EAYIGKFELF KKVCKMAACP FEDTWGFSKE  60
   61 EEDYLCYNTT PSKSQIQCSC SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits