YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPAC20G4.05c
Organism: Schizosaccharomyces pombe
Length: 568 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20G4.05c.

Description E-value Query
Range
Subject
Range
gi|38105097, gi|... - gi|39942158|ref|XP_360616.1| hypothetical protein MG03159.4 [Magnaporthe grisea 70-15], gb|EAA51564....
654.0 [0..5] [568..29]
gi|115385943, gi... - gi|115385943|ref|XP_001209518.1| conserved hypothetical protein [Aspergillus terreus NIH2624], gi|11...
649.0 [0..5] [568..14]
gi|42551231, gi|... - gi|46121637|ref|XP_385373.1| hypothetical protein FG05197.1 [Gibberella zeae PH-1], gi|42551231|gb|E...
644.0 [0..5] [568..23]
gi|85083763 - gi|85083763|ref|XP_957181.1| hypothetical protein ( hypothetical protein B17C10.170 [imported] - Neu...
gi|32415435, gi|... - gi|32415435|ref|XP_328197.1| hypothetical protein ( hypothetical protein B17C10.170 [imported] - Neu...
633.0 [0..5] [568..59]
gi|16416091 - gi|16416091|emb|CAB91237.2| conserved hypothetical protein [Neurospora crassa]
gi|164428165, gi... - gi|164428165|ref|XP_957181.2| hypothetical protein NCU01758 [Neurospora crassa OR74A], gi|157072037|...
633.0 [0..5] [568..22]
gi|13430492 - gi|13430492|gb|AAK25868.1|AF360158_1 unknown protein [Arabidopsis thaliana]
628.0 [0..1] [568..40]
gi|24986851, gi|... - gi|26991744|ref|NP_747169.1| hypothetical protein PP_5068 [Pseudomonas putida KT2440], gi|24986851|g...
627.0 [0..1] [568..25]

Back

Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKLKDLPV SSTFTSNLPP DPLVPTVQAM KKADDRILHV PRFVEGGGLF TYLTPSLKAN  60
   61 SQLLAYSPSS VKSLGLEESE TQTEAFQQLV VGSNVDVNKC CPWAQCYGGY QFGDWAGQLG 120
  121 DGRVVSLCEL TNPETGKRFE IQVKGAGRTP YSRFADGKAV LRSSIREYLC CEALYALGIP 180
  181 TT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [183-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QALAISNLEG VVAQRETVEP CAVVCRMAPS WIRIGTFDLQ GINNQIESLR KLADYCLNFV  60
   61 LKDGFHGGDT GNRYEKLLRD VAYRNAKTVA KWQAYGFMNG VLNTDNTSIL GLSIDYGPFG 120
  121 FLDVYN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [309-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFTPNHDDV FLRYSYRNQP DIIIWNLSKL ASALVELIGA CDKVDDLQYM EQLHNSTDLL  60
   61 KKAFAYTSEV FEKIVEEYKN IVQNDFYDLM FKRVGLPSDS SNKILITDLL QILEDYELDM 120
  121 PNCFSFLSRN SPSSMENEEY AAKLMQACIC LNPNNERVRN ESVKAFTNWV GRYSEATK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [487-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQEDSSRLAS MKKVNPHFTL RNWVLEEVIK EAYIGKFELF KKVCKMAACP FEDTWGFSKE  60
   61 EEDYLCYNTT PSKSQIQCSC SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle