YRC Public Data Repository - Protein Structure Prediction

Protein:	pcd1
Organism:	Schizosaccharomyces pombe
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcd1.

Description	E-value	Query Range	Subject Range
gi\|25522240, gi\|... - pir\|\|AB2853 NTP pyrophosphohydrolase, MutT family [imported] - Agrobacterium tumefaciens (strain C58... gi\|17740724, gi\|... - gi\|17936134\|ref\|NP_532924.1\| NTP pyrophosphohydrolase, MutT family [Agrobacterium tumefaciens str. C...	153.0	[0..77]	[275..11]
gi\|225853032, gi... - gi\|225853032\|ref\|YP_002733265.1\| NUDIX hydrolase [Brucella melitensis ATCC 23457], gi\|225641397\|gb\|A... gi\|225627994, gi... - gi\|225627994\|ref\|ZP_03786030.1\| MutT/nudix family protein [Brucella ceti str. Cudo], gi\|225617157\|gb... gi\|62290438, gi\|... - gi\|62290438\|ref\|YP_222231.1\| MutT/nudix family protein [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|254697884 - gi\|254697884\|ref\|ZP_05159712.1\| NUDIX hydrolase [Brucella abortus bv. 2 str. 86/8/59] gi\|254694229 - gi\|254694229\|ref\|ZP_05156057.1\| NUDIX hydrolase [Brucella abortus bv. 3 str. Tulya] gi\|254689740 - gi\|254689740\|ref\|ZP_05152994.1\| NUDIX hydrolase [Brucella abortus bv. 6 str. 870] gi\|237789244, gi... - gi\|237815946\|ref\|ZP_04594943.1\| MutT/nudix family protein [Brucella abortus str. 2308 A], gi\|2377892... gi\|254710591 - gi\|254710591\|ref\|ZP_05172402.1\| NUDIX hydrolase [Brucella pinnipedialis B2/94] gi\|254708221 - gi\|254708221\|ref\|ZP_05170049.1\| NUDIX hydrolase [Brucella pinnipedialis M163/99/10] gi\|254704807 - gi\|254704807\|ref\|ZP_05166635.1\| NUDIX hydrolase [Brucella suis bv. 3 str. 686] gi\|254702275 - gi\|254702275\|ref\|ZP_05164103.1\| NUDIX hydrolase [Brucella suis bv. 5 str. 513] gi\|254730775 - gi\|254730775\|ref\|ZP_05189353.1\| NUDIX hydrolase [Brucella abortus bv. 4 str. 292] gi\|189024668, gi... - gi\|189024668\|ref\|YP_001935436.1\| MutT/nudix family protein [Brucella abortus S19], gi\|189020240\|gb\|A... gi\|254717835 - gi\|254717835\|ref\|ZP_05179646.1\| NUDIX hydrolase [Brucella ceti M13/05/1] gi\|161619497, gi... - gi\|161619497\|ref\|YP_001593384.1\| NUDIX hydrolase [Brucella canis ATCC 23365], gi\|161336308\|gb\|ABX626... gi\|254714774 - gi\|254714774\|ref\|ZP_05176585.1\| NUDIX hydrolase [Brucella ceti M644/93/1]	153.0	[0..71]	[275..3]
gi\|25526325 - pir\|\|AH3309 phosphohydrolase (mutT/nudiX family protein) BMEI0462 [imported] - Brucella melitensis (... gi\|17982372, gi\|... - gi\|17986745\|ref\|NP_539379.1\| phosphohydrolase (MUTT/NUDIX family protein) [Brucella melitensis 16M],...	152.0	[0..71]	[275..3]
gi\|14023181, gi\|... - gi\|14023181\|dbj\|BAB49788.1\| mll2727 [Mesorhizobium loti MAFF303099], gi\|13472435\|ref\|NP_104002.1\| hy...	148.0	[0..74]	[275..2]
gi\|84361123 - gi\|84361123\|ref\|ZP_00985803.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	141.0	[0..61]	[277..4]
gi\|56314388, gi\|... - gi\|56478345\|ref\|YP_159934.1\| hypothetical protein ebA5123 [Aromatoleum aromaticum EbN1], gi\|56314388...	141.0	[0..84]	[274..9]
gi\|118710951, gi... - gi\|170732384\|ref\|YP_001764331.1\| NUDIX hydrolase [Burkholderia cenocepacia MC0-3], gi\|169815626\|gb\|A... gi\|105892340, gi... - gi\|67659500\|ref\|ZP_00456861.1\| NUDIX hydrolase [Burkholderia cenocepacia AU 1054], gi\|67092879\|gb\|EA... gi\|116689096, gi... - gi\|67665350\|ref\|ZP_00462614.1\| NUDIX hydrolase [Burkholderia cenocepacia HI2424], gi\|67101050\|gb\|EAM...	140.0	[0..61]	[277..4]
gi\|23502418, gi\|... - gi\|23502418\|ref\|NP_698545.1\| MutT/nudix family protein [Brucella suis 1330], gi\|23348405\|gb\|AAN30460... gi\|82700361 - gi\|82700361\|ref\|YP_414935.1\| NUDIX hydrolase [Brucella melitensis biovar Abortus 2308] gi\|82616462 - gi\|82616462\|emb\|CAJ11527.1\| NUDIX hydrolase [Brucella melitensis biovar Abortus 2308] gi\|148559044, gi... - gi\|148559044\|ref\|YP_001259428.1\| MutT/nudix family protein [Brucella ovis ATCC 25840], gi\|148370301\|...	140.0	[0..111]	[275..3]
gi\|46316687, gi\|... - gi\|78065659\|ref\|YP_368428.1\| NUDIX hydrolase [Burkholderia sp. 383], gi\|77966404\|gb\|ABB07784.1\| NUDI...	140.0	[0..61]	[277..4]
gi\|45915852, gi\|... - gi\|69276884\|ref\|ZP_00612356.1\| NUDIX hydrolase [Mesorhizobium sp. BNC1], gi\|68191783\|gb\|EAN06438.1\| ...	140.0	[0..74]	[275..8]

Back

Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLRWKGH QRFLTRQNSL VGFIWSPLKN TFSKRNSILN NQVCFEAIKY IQRHYFSSQS  60
   61 HHVTYLHQSP LEKLVSNGVV NENGDLTMDS LSHQIYLLHK NRPTLPLKPT NQPTRFASVL 120
  121 MPLVNTSQGA SLLLTQRSPN LRSHAGQMCF PGGRVEPSDG SHYYAALRET YEEIGFLPNF 180
  181 FTYLTTFPPL FTRDEKTEIR AYLAFSVQTS LPSLGTGEVK DLFYVPLTSF LNPKHQKISR 240
  241 FRNTDLLYVE FNIDKIPRIW GITAVILNMY LNSICPDALI SIPKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
binding	0.219596749019403	bayes_pls_golite062009
hydrolase activity	0.214635043348567	bayes_pls_golite062009
nucleic acid binding	0.0715631252684563	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: