YRC Public Data Repository - Protein Structure Prediction

Protein:	chr3
Organism:	Schizosaccharomyces pombe
Length:	932 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chr3.

Description	E-value	Query Range	Subject Range
gi\|84375186, gi\|... - gi\|84394204\|ref\|ZP_00992934.1\| hypothetical protein V12B01_19651 [Vibrio splendidus 12B01], gi\|84375...	483.0	[0..514]	[931..58]
gi\|69255787, gi\|... - gi\|69255787\|ref\|ZP_00605529.1\| Sel1-like repeat [Magnetococcus sp. MC-1], gi\|68248152\|gb\|EAN30235.1\|...	478.0	[0..520]	[931..401]
gi\|88934891, gi\|... - gi\|88934891\|ref\|ZP_01140530.1\| Sel1-like repeat [Geobacter uraniumreducens Rf4], gi\|88918355\|gb\|EAR3...	433.0	[0..530]	[931..72]
gi\|78172090, gi\|... - gi\|78189891\|ref\|YP_380229.1\| Sel1 repeat-containing protein [Chlorobium chlorochromatii CaD3], gi\|78...	426.0	[0..560]	[930..36]
gi\|53750914, gi\|... - gi\|54297129\|ref\|YP_123498.1\| hypothetical protein lpp1174 [Legionella pneumophila str. Paris], gi\|53...	419.0	[0..564]	[931..40]
gi\|52628517, gi\|... - gi\|52841406\|ref\|YP_095205.1\| TPR repeat-containing protein [Legionella pneumophila subsp. pneumophil...	419.0	[0..564]	[931..44]
gi\|53753948, gi\|... - gi\|54294116\|ref\|YP_126531.1\| hypothetical protein lpl1180 [Legionella pneumophila str. Lens], gi\|537...	416.0	[0..564]	[931..40]
gi\|82409304, gi\|... - gi\|82701239\|ref\|YP_410805.1\| Sel1 repeat-containing protein [Nitrosospira multiformis ATCC 25196], g...	411.0	[0..551]	[931..41]
gi\|26247143, gi\|... - gi\|26247143\|ref\|NP_753183.1\| hypothetical protein c1269 [Escherichia coli CFT073], gi\|26107544\|gb\|AA... gi\|227835005, gi... - gi\|227888009\|ref\|ZP_04005814.1\| Sel1 family repeat-containing serine/threonine protein kinase [Esche... gi\|47600612 - gi\|47600612\|emb\|CAE55733.1\| hypothetical protein [Escherichia coli Nissle 1917] gi\|47600612 - gi\|47600612\|emb\|CAE55733.1\| hypothetical protein [Escherichia coli Nissle 1917]	405.0	[0..587]	[930..24]
gi\|91210161, gi\|... - gi\|91210161\|ref\|YP_540147.1\| hypothetical protein UTI89_C1133 [Escherichia coli UTI89], gi\|91071735\|...	404.0	[0..587]	[930..24]

Back

Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDSHSSRRK YEKEKLVFAT NNGKRTEGTP AFLKSGNTAS SSSPTLQFRP TSRYPTLSHE  60
   61 PVYTNVLDLS SRIDANRASI MSATMGTPPS ALKFSKKKIS RPVVSEDTFK DKLPRATIPV 120
  121 KPEPQPQYKI PAAPAPTSKR VVNRGLKLNT NLRQASPILP SPSLKLDRQD AP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.983
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [173-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQINHEQKED FLVSIPRPTP MTNLDDGKDE IGQPDPHRKY MAPPRVNSIS RVQRRMSYIP  60
   61 YGGFDDFLDN YYKDDDTVLE DNQLKSNSRI ETLEEEDGAE SDSITNTVSN ASSDAEPAHR 120
  121 HLGPVYENSG HLPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [307-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSHFSSTDSN TDSFGLESDE RSLPSVSNDL KSSETLKNPR NDDLLTLQQP PRYPHSQMVM  60
   61 LPARSPVEVP APTFDRRNVS RNSNNNSPEG YDNNRTNPTV NNLPSYPTNL ARPKAIKPMP 120
  121 TSIHGQTSPL SPIPPVHTTH GLVSDIRPLP SVSSPIMRAD STPISHNLAV TPSFSPIPQQ 180
  181 SNKSIGNHKN TSVANVSSKV ANSKFERNIS MM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [519-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSNASSPAI FEVGAEAKEK TKDAIPCHPD DKLMIPSPKI VTHGDAMQEE QRLRQKSQIT  60
   61 PDDEVELAKV YLNALETLEN KPSLAPDQAS YNTRINVYRT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [619-932]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAVELLKKNA YPSKTQNTVP EALFLIGQFH SQGVLGFRRD LGKAFELYSL AAKKGHPLSN  60
   61 YRVAVCLQTG TGVKPDTSKC VAIYKKAAEM DVVEAMFRIA LIYLNGLLGQ KRNISLGVQW 120
  121 LERACKSKGP ESVRAMYELA KIYEQPDRYG VSATPERKFE LYKQSAVYGY AAAQCKLGEC 180
  181 YEHGLLGCLA EPRRSIFWYT RAAEQDYGEA ELGLSGWYLT GSEGILPKNG EEALLWAHKA 240
  241 ACKGLAKAQY AVGFMMEQGI GVAADPSSAH NWYIRAAKQG FPKAKKRLEE QALSSKQTHS 300
  301 KAPKKKQQEQ CVVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	1ouvA
Description:	Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.96958278583621	bayes_pls_golite062009
protein binding	0.559882636047776	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: