YRC Public Data Repository - Protein Structure Prediction

Protein:	med31
Organism:	Schizosaccharomyces pombe
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for med31.

Description	E-value	Query Range	Subject Range
gi\|115483476, gi... - gi\|78709017\|gb\|ABB47992.1\| mediator complex subunit SOH1, putative, expressed [Oryza sativa (japonic...	174.0	[0..1]	[106..1]
gi\|125776368, gi... - gi\|54638997\|gb\|EAL28399.1\| GA14867-PA [Drosophila pseudoobscura], gi\|125776368\|ref\|XP_001359254.1\| G...	174.0	[0..1]	[129..4]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	170.0	[0..4]	[104..9]
MED31_TAESO - Mediator of RNA polymerase II transcription subunit 31 OS=Taenia solium GN=Ts24233 PE=2 SV=1	169.0	[0..7]	[106..21]
MED31_ARATH - Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1	163.0	[0..3]	[106..18]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1	163.0	[0..4]	[104..10]
MED31_MOUSE - Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2	163.0	[0..5]	[104..6]
ENSMMUG000000037... - null, null MED31 - mediator complex subunit 31 ENSPTRT00000015946 - null ENSCJAT00000021710 - null	162.0	[0..5]	[104..6]
MED31_BOVIN - Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1	162.0	[0..5]	[104..6]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKWLLSKV PDDKSRFEIE LEFVQMLSNP WYLNFLAQHK YFEDEAFLQY LEYMEYWREP  60
   61 EYVKFIIYPT CLHMLTLLKN PQFRNDISRA DLSKQVNDEI YYEWLGKGLQ QYGSADDATL 120
  121 SQPQQEEDEK KVDVKKENE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.431798
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits