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View Structure Prediction Details

Protein: med31
Organism: Schizosaccharomyces pombe
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for med31.

Description E-value Query
Range
Subject
Range
gi|115483476, gi... - gi|78709017|gb|ABB47992.1| mediator complex subunit SOH1, putative, expressed [Oryza sativa (japonic...
174.0 [0..1] [106..1]
gi|125776368, gi... - gi|54638997|gb|EAL28399.1| GA14867-PA [Drosophila pseudoobscura], gi|125776368|ref|XP_001359254.1| G...
174.0 [0..1] [129..4]
gi|220944342, gi... - gi|220954132|gb|ACL89609.1| MED31-PA [synthetic construct], gi|220944342|gb|ACL84714.1| MED31-PA [sy...
FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...
170.0 [0..4] [104..9]
MED31_TAESO - Mediator of RNA polymerase II transcription subunit 31 OS=Taenia solium GN=Ts24233 PE=2 SV=1
169.0 [0..7] [106..21]
MED31_ARATH - Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1
163.0 [0..3] [106..18]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1
163.0 [0..4] [104..10]
MED31_MOUSE - Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2
163.0 [0..5] [104..6]
ENSMMUG000000037... - null, null
MED31 - mediator complex subunit 31
ENSPTRT00000015946 - null
ENSCJAT00000021710 - null
162.0 [0..5] [104..6]
MED31_BOVIN - Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1
162.0 [0..5] [104..6]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKWLLSKV PDDKSRFEIE LEFVQMLSNP WYLNFLAQHK YFEDEAFLQY LEYMEYWREP  60
   61 EYVKFIIYPT CLHMLTLLKN PQFRNDISRA DLSKQVNDEI YYEWLGKGLQ QYGSADDATL 120
  121 SQPQQEEDEK KVDVKKENE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.431798
Match: PF05669.3
Description: No description for PF05669.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.618 N/A N/A a.63.1 Apolipophorin-III
View Download 0.614 N/A N/A a.144.1 PABC (PABP) domain
View Download 0.578 N/A N/A a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase
View Download 0.575 N/A N/A a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase
View Download 0.464 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.441 N/A N/A d.92.1 Metalloproteases ("zincins"), catalytic domain
View Download 0.437 N/A N/A a.144.1 PABC (PABP) domain
View Download 0.354 N/A N/A a.63.1 Apolipophorin-III


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