YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1861.08c
Organism:	Schizosaccharomyces pombe
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1861.08c.

Description	E-value	Query Range	Subject Range
gi\|186468985, gi... - gi\|23124578\|ref\|ZP_00106558.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	169.0	[0..1]	[236..25]
gi\|75907715, gi\|... - gi\|75907715\|ref\|YP_322011.1\| small GTP-binding protein domain-containing protein [Anabaena variabili...	168.0	[0..1]	[235..154]
gi\|113611712, gi... - gi\|125600957\|gb\|EAZ40533.1\| hypothetical protein OsJ_24989 [Oryza sativa Japonica Group], gi\|1154731...	164.0	[0..1]	[239..242]
gi\|113477255, gi... - gi\|71673924\|ref\|ZP_00671672.1\| Small GTP-binding protein domain [Trichodesmium erythraeum IMS101], g...	160.0	[0..1]	[236..123]
gi\|90591507, gi\|... - gi\|90591507\|ref\|ZP_01247149.1\| PKD:Leucine-rich repeat [Flavobacterium johnsoniae UW101], gi\|9043256...	159.0	[0..1]	[239..201]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLNAEFLSQ VPSFISPLKE TELDLRWYQI PIIENLGVLR DVHDAIDFTD NDIRYLGNFP  60
   61 RMKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1a9nA
Description:	Splicesomal U2A' protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [65-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQTLLCGNNR ITAIAPDIGK VLPNLKTLSL AQNHLQEIAD LDPLASCPQL TNLSCIDNPV  60
   61 AQKQYYRLYL IWRIPSLHIL DFERVRRNER LRAEEVFGQI QNPTEIASSI MGVKSRVFDL 120
  121 AALVQSHPEA NSPITTGYTL TPEEREKIKE AIKNASSIAE INRLEAMLLE GKIPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1fqvA
Description:	Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits