YRC Public Data Repository - Protein Structure Prediction

Protein:	ppr1
Organism:	Schizosaccharomyces pombe
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppr1.

Description	E-value	Query Range	Subject Range
gi\|229128147, gi... - gi\|229128147\|ref\|ZP_04257129.1\| Phosphinothricin N-acetyltransferase [Bacillus cereus BDRD-Cer4], gi... gi\|29896482, gi\|... - gi\|30020929\|ref\|NP_832560.1\| phosphinothricin N-acetyltransferase [Bacillus cereus ATCC 14579], gi\|2...	124.0	[0..27]	[209..2]
gi\|42737818, gi\|... - gi\|42781894\|ref\|NP_979141.1\| acetyltransferase [Bacillus cereus ATCC 10987], gi\|42737818\|gb\|AAS41749...	124.0	[0..27]	[209..2]
gi\|94428452, gi\|... - gi\|94499698\|ref\|ZP_01306235.1\| Histone acetyltransferase HPA2/related acetyltransferase [Oceanobacte...	123.0	[0..24]	[201..1]
gi\|115255784, gi... - gi\|116251136\|ref\|YP_766974.1\| putative phosphinothricin N-acetyltransferase [Rhizobium leguminosarum...	122.0	[0..20]	[202..12]
gi\|25286364 - pir\|\|AE3299 phosphinothricin N-acetyltransferase (EC 2.3.1.-) [imported] - Brucella melitensis (stra... gi\|17986662, gi\|... - gi\|17986662\|ref\|NP_539296.1\| phosphinothricin N-acetyltransferase [Brucella melitensis 16M], gi\|1798...	122.0	[0..25]	[201..3]
gi\|254703435 - gi\|254703435\|ref\|ZP_05165263.1\| phosphinothricin N-acetyltransferase [Brucella suis bv. 3 str. 686] gi\|23348505, gi\|... - gi\|23502509\|ref\|NP_698636.1\| acetyltransferase [Brucella suis 1330], gi\|23348505\|gb\|AAN30551.1\| acet... gi\|161619584, gi... - gi\|161619584\|ref\|YP_001593471.1\| phosphinothricin N-acetyltransferase [Brucella canis ATCC 23365], g...	122.0	[0..25]	[201..3]
gi\|69935610, gi\|... - gi\|69935610\|ref\|ZP_00630546.1\| GCN5-related N-acetyltransferase [Paracoccus denitrificans PD1222], g... gi\|1002867 - gi\|1002867\|gb\|AAC44553.1\| unknown	122.0	[0..25]	[207..8]
gi\|191172872, gi... - gi\|191172872\|ref\|ZP_03034408.1\| acetyltransferase, GNAT family [Escherichia coli F11], gi\|190906878\|... gi\|26108135, gi\|... - gi\|26247733\|ref\|NP_753773.1\| acetyltransferase yncA [Escherichia coli CFT073], gi\|26108135\|gb\|AAN803... gi\|91210691, gi\|... - gi\|91210691\|ref\|YP_540677.1\| acetyltransferase YncA [Escherichia coli UTI89], gi\|91072265\|gb\|ABE0714... gi\|157159424, gi... - gi\|157159424\|ref\|YP_001462722.1\| acetyltransferase [Escherichia coli E24377A], gi\|157081454\|gb\|ABV21... gi\|226900186, gi... - gi\|237705429\|ref\|ZP_04535910.1\| acetyltransferase yncA [Escherichia sp. 3_2_53FAA], gi\|226900186\|gb\|... gi\|227886165, gi... - gi\|227886165\|ref\|ZP_04003970.1\| acetyltransferase yncA [Escherichia coli 83972], gi\|227836830\|gb\|EEJ...	122.0	[0..22]	[207..19]
gi\|84358723 - gi\|84358723\|ref\|ZP_00983493.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	121.0	[0..24]	[204..1]
gi\|52142703, gi\|... - gi\|52142703\|ref\|YP_084124.1\| phosphinothricin N-acetyltransferase [Bacillus cereus E33L], gi\|5197617...	121.0	[0..27]	[209..2]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDPNTIPPW RCTDFNAWCI AVDKSTNVKN KEELLSTLTY FINYEIEMGQ TYPIDIKMTR  60
   61 NEAEDFFFKF CTVICVPVES ETSPAPDLAT ASIDWKTSLL GAFYIKPNYP GRCSHICNGG 120
  121 FLVSPSHRSK GIGRNLANAY LYFAPRIGFK SSVFNLVFAT NIKSIRLWER LNFTRAGIIK 180
  181 DAGRLKGHEG YVDAYIYQYH FPSLEDALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	2.20834442920085	bayes_pls_golite062009
catalytic activity	1.43673095392907	bayes_pls_golite062009
N-acyltransferase activity	1.36435125293482	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.14527372743923	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.956239096622231	bayes_pls_golite062009
acyltransferase activity	0.943620954557751	bayes_pls_golite062009
N-acetyltransferase activity	0.92614241216411	bayes_pls_golite062009
binding	0.671478296426458	bayes_pls_golite062009
acetyltransferase activity	0.518765542042159	bayes_pls_golite062009
histone acetyltransferase activity	0.111099570274813	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.111099570274813	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: