| Protein: | pob1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 871 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pob1.
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..5] | [849..13] |
|
|
248.0 | [0..5] | [849..20] |
|
|
243.0 | [0..5] | [843..17] |
|
|
238.0 | [0..74] | [849..21] |
|
|
231.0 | [0..3] | [853..44] |
|
|
228.0 | [0..5] | [849..5] |
|
|
213.0 | [0..28] | [703..934] |
|
|
207.0 | [0..33] | [681..740] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MASQRFVIAL HSFPGKSSDE LPLVEGRKYL LIKMDEEFGD GWWEGEDEQG NRGIFPASHV 60
61 ELISDERSDS SDSRRGKEDF SISTAEVTRS SLSSSRSTSS RS
|
| Detection Method: |  |
| Confidence: | 9.30103 |
| Match: | 2eyzA |
| Description: | No description for 2eyzA was found. |
|
Region A: Residues: [103-172] |
1 11 21 31 41 51
| | | | | |
1 DKDSEKLYSN NSLSSSHSSI LNGPLDSLSK PSVPSNFNSM FPSSKQEGPS PLLDNQPSSD 60
61 LSNFNTIDAD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [173-334] |
1 11 21 31 41 51
| | | | | |
1 YNNASASTSA PATSASLKKV LSAEDSVRET ITDIETALQN MSTSASRTPN DSSPLPYIEN 60
61 RPASSLAVSE KIQNVPNWST EEVVEWLMNA GLGSVAPNFA ENEITGEILL GLDSNVLKEL 120
121 NITSFGKRFE VLRKIQQLKD SYEQSLYEEY PQFAEPISVS QS
|
| Detection Method: | |
| Confidence: | 2.48 |
| Match: | 2b6gA |
| Description: | RNA recognition by the Vts1 SAM domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [335-426] |
1 11 21 31 41 51
| | | | | |
1 SDSSSSIPKK SNDEAGGSPS KSSPTRPGFN DYVNRPTSVM PSLSNMIVSP DLDSSPSTDW 60
61 NQYVIPPLAT PSSRNSKSTQ SAVPENVSRF DS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [427-602] |
1 11 21 31 41 51
| | | | | |
1 NEPSATSPIL KRSSPTDSIS QNSGLPSRLT EPISSPSTSS IDVDKEGTSF PGLPYHSSKG 60
61 NLYAPQPSSN VPTKFTGGAS ESSSVPPRPI PSAMKGKAPA SAISIEALEE LDPPKITTID 120
121 GESPSSISSR LPSSNLEQGS SSSVTKSPES MPDPSAKASS PVTSKGVSIN EKSAVN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [603-700] |
1 11 21 31 41 51
| | | | | |
1 NYATPLSKPQ PKDTKGSKLG NTFVAPSPAA SLPASPPVGT ELKTRPTLRS VASSPLNKEP 60
61 IGKRKSKRDI FGRQKVLPTG ISEGLSNIPA KEAIKTAD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [701-871] |
1 11 21 31 41 51
| | | | | |
1 CHGWMRKRSD RYGVWKSRYF VLKGTRLSYY HSLNDASEKG LIDMTSHRVT KTDDIVLSGG 60
61 KTAIKLIPPA PGAAKAAVMF TPPKVHYFTC ENNEELHRWS SAFLKATVER DMSVPVLTTS 120
121 RMPTISLSKA KELRTRPPSL LIDDENEANL TSSIGLKKNA KQKNKKSSKQ K
|
| Detection Method: | |
| Confidence: | 36.69897 |
| Match: | 1fhwA |
| Description: | Grp1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.45243621998765 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.36862097678996 | bayes_pls_golite062009 |
| actin binding | 2.33076715684475 | bayes_pls_golite062009 |
| protein binding | 2.02185635612105 | bayes_pls_golite062009 |
| actin filament binding | 1.07760654703512 | bayes_pls_golite062009 |
