YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1093.02
Organism:	Schizosaccharomyces pombe
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1093.02.

Description	E-value	Query Range	Subject Range
gi\|125531706 - gi\|125531706\|gb\|EAY78271.1\| hypothetical protein OsI_33318 [Oryza sativa Indica Group] gi\|31431696, gi\|... - gi\|37533692\|ref\|NP_921148.1\| putative pyridoxamine 5-phosphate oxidase [Oryza sativa (japonica culti...	303.0	[0..8]	[231..254]
gi\|106770932, gi... - gi\|148654599\|ref\|YP_001274804.1\| pyridoxamine 5'-phosphate oxidase [Roseiflexus sp. RS-1], gi\|148566...	302.0	[0..12]	[231..1]
gi\|254251577, gi... - gi\|84362783\|ref\|ZP_00987397.1\| COG0259: Pyridoxamine-phosphate oxidase [Burkholderia dolosa AUO158],...	299.0	[0..12]	[231..2]
gi\|84355579 - gi\|84355579\|ref\|ZP_00980459.1\| COG0259: Pyridoxamine-phosphate oxidase [Burkholderia cenocepacia PC1... PDXH_BURCH - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain HI2424) GN=pdxH PE=... PDXH_BURCA - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain AU 1054) GN=pdxH PE...	298.0	[0..12]	[231..2]
gi\|34784069 - gi\|34784069\|gb\|AAH57246.1\| Pnpo protein [Danio rerio]	298.0	[0..9]	[231..36]
gi\|254234185, gi... - gi\|84322039\|ref\|ZP_00970384.1\| COG0259: Pyridoxamine-phosphate oxidase [Pseudomonas aeruginosa C3719... PDXH_PSEA8 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa (strain LESB58) GN=pdxH PE=3 ...	298.0	[0..13]	[231..4]
PDXH_PSEAB - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pdxH P...	297.0	[0..13]	[231..4]
gi\|52208907, gi\|... - gi\|53718493\|ref\|YP_107479.1\| pyridoxamine 5'-phosphate oxidase [Burkholderia pseudomallei K96243], g... PDXH_BURPS - (Q63WN7) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx) gi\|76578823, gi\|... - gi\|76809370\|ref\|YP_332473.1\| pyridoxamine 5'-phosphate oxidase [Burkholderia pseudomallei 1710b], gi...	297.0	[0..9]	[231..5]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENTDSTHE KLIFAPSRYQ YEKSSLHRDA LMGKDPLVLF NQWFQEATDD EGIKSPESTT  60
   61 LSTARLPSGR VSSRLVLLKE LDHRGFIIFT NLGTSKKAKD LKSNPYASLS FWWEPLQRQV 120
  121 RVEGIIERLS REETEEYFKT RPRNSRIGAW ASPQSEVIAD REELEKRVEE YKKKFGEDES 180
  181 VPVPVPDFWG GIRIVPLEIE FWQGGKYRLH DRFSFRRNTL DEDYELVRLA P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.09691
Match:	1ci0A
Description:	Pyridoxine 5'-phoshate oxidase (PNP oxidase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pyridoxamine-phosphate oxidase activity	3.81533880638523	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	1.18444956617957	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009
oxidoreductase activity	0.0268904833845668	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: