| Protein: | mis3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 327 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mis3.
| Description | E-value | Query Range |
Subject Range |
|
|
384.0 | [0..20] | [327..111] |
|
|
374.0 | [0..20] | [327..5] |
|
|
372.0 | [0..20] | [325..5] |
|
|
372.0 | [0..20] | [317..5] |
|
|
372.0 | [0..1] | [327..1] |
|
|
371.0 | [0..20] | [319..5] |
|
|
370.0 | [0..21] | [322..6] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MTEVESSTEN NVIVNKNKRY RRDKPWDTDD IDHWKIEPFT KDDSKESFLE ESSFATLFPK 60
61 YREKYLR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [68-245] |
1 11 21 31 41 51
| | | | | |
1 EVWPHVTRAL DKFGITCVLD LVEGSMTVKT TRKTFDPYSI LDARDLIKLL ARSVPFPQAV 60
61 KIMQDGVACD IIKIGNILRN KERFVKRRQR LIGTNGQTLK ALELLTQCYI LVQGTTVAVM 120
121 GGYKGLKEVR RIVEDCMHNI HPIYHIKELM IKRELAKDPT LANESWDRFL PQFKKRNV
|
| Detection Method: | |
| Confidence: | 31.0 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.07437653952404 | bayes_pls_golite062009 |
| mRNA binding | 4.07599584461947 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| 1.56143840583911 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| protein binding | 0.934192915895039 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.9296581376632 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.3686746342524 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [246-327] |
1 11 21 31 41 51
| | | | | |
1 ARRKPAKIRE TKEYTPFPPA QPPSKLDLEI ESGEYFLKKE EKERKKRAEK KEQQKEKKKE 60
61 KEKERMKAFI PPEESSKKRK RD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.380 | 0.107 | rRNA processing | a.22.1 | Histone-fold |
| View | Download | 0.358 | 0.028 | rRNA processing | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.463 | 0.007 | rRNA processing | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.459 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.456 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
