Protein: | map1 |
Organism: | Schizosaccharomyces pombe |
Length: | 398 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for map1.
Description | E-value | Query Range |
Subject Range |
|
260.0 | [0..18] | [393..1] |
|
248.0 | [0..14] | [393..2] |
|
248.0 | [0..18] | [393..1] |
|
248.0 | [0..18] | [393..1] |
|
247.0 | [0..18] | [393..1] |
|
246.0 | [0..18] | [393..1] |
|
244.0 | [0..18] | [393..1] |
Region A: Residues: [1-96] |
1 11 21 31 41 51 | | | | | | 1 MMDERKLSNF QIDGEKAYTG SSQGNSYLED RQKRQNTFTK RKAGIFKKAN ELALLTGSEV 60 61 MVLVVSETGL VHTFSTPKLE NVVKSPEGQK LITESL |
Detection Method: | |
Confidence: | 22.045757 |
Match: | 1mnmA |
Description: | MCM1 transcriptional regulator |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.47820295830817 | bayes_pls_golite062009 |
DNA binding | 4.34885522982729 | bayes_pls_golite062009 |
nucleic acid binding | 4.22473647889076 | bayes_pls_golite062009 |
binding | 3.73009730829487 | bayes_pls_golite062009 |
transcription factor activity | 3.68208249443337 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.65616273505159 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.72567983955215 | bayes_pls_golite062009 |
transcription activator activity | 1.38059870614713 | bayes_pls_golite062009 |
protein binding | 1.27646601063623 | bayes_pls_golite062009 |
DNA bending activity | 0.167327205417291 | bayes_pls_golite062009 |
Region A: Residues: [97-204] |
1 11 21 31 41 51 | | | | | | 1 INATTDQNES QASQAKQSSA QLSDSESGYP LDHEEMRISE ENGPSHIENL NFFSDIDNFS 60 61 KTSAEEIASK LFSSVSPTHE TLQFDHGLQN LEGFQANEHP EMFADHSI |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [205-398] |
1 11 21 31 41 51 | | | | | | 1 DFYNSNNVDI PALSMLTSQT SSSSTLNLPP EPASREVKIF PKQGKRIFSP STGIDYETTG 60 61 QHSVNSPPST YKHRRSLNKS FATRSEPQTP RKNKIRDSLQ SSPLNFPPRD RPPLIPISRI 120 121 AVPSTIETEE RQYRGNQKII NFYAKIFEPN SGLGTSSEGA SSSFPDVDPN LAQNGVPYYS 180 181 LPDIDHNQFD HLRR |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.