| Protein: | tif35 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 282 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tif35.
| Description | E-value | Query Range |
Subject Range |
|
|
176.0 | [0..97] | [282..1] |
|
|
174.0 | [0..97] | [282..30] |
|
|
171.0 | [0..1] | [280..497] |
|
|
170.0 | [0..102] | [282..10] |
|
|
169.0 | [0..11] | [281..12] |
|
|
169.0 | [0..102] | [282..11] |
|
|
168.0 | [0..102] | [282..10] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MSSSKSLDWA DDEDYGTGLP SIQTFDNPDG TKTMIEFRID DNGKKVKVTR VIRKTVITER 60
61 VQHAVAERKK WKKFGKEAGK NSGVDARTTS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.626 | d.93.1 | SH2 domain |
| View | Download | 0.617 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.672 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.626 | d.93.1 | SH2 domain |
| View | Download | 0.619 | d.93.1 | SH2 domain |
|
Region A: Residues: [91-282] |
1 11 21 31 41 51
| | | | | |
1 VGENVQLRLQ LGWTTTKEEE QDEAALAAAK VKAKGSSVVR CRACKGNHFT AQCPYKSIIG 60
61 PVDEPPLDAS PVSSRASGAL GEKGRYIAPH LRAGSGRESG DSMFKRERDD SATLRVTNLS 120
121 DDTREEELRD LFRRFGGIQR VYLAKDKETG RAKGFAFVSY YDRDCAIKAR DRLDGYGWNN 180
181 LILRCEFSKP RD
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.90076005245206 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| translation initiation factor activity | 3.27900316559423 | bayes_pls_golite062009 |
| mRNA binding | 2.92795844574986 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| 1.49431666307335 | bayes_pls_golite062009 | |
| protein binding | 1.32954276279597 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
| RNA cap binding | 0.847034036194541 | bayes_pls_golite062009 |
| transcription regulator activity | 0.837097200210041 | bayes_pls_golite062009 |
| DNA binding | 0.828908978889027 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
