YRC Public Data Repository - Protein Structure Prediction

Protein:	tif11
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tif11.

Description	E-value	Query Range	Subject Range
gi\|51766992, gi\|... - gi\|94394220\|ref\|XP_977854.1\| PREDICTED: similar to X-linked eukaryotic translation initiation factor...	175.0	[0..1]	[131..1]
gi\|83320111, gi\|... - gi\|83320111\|ref\|NP_001020500.1\| eukaryotic translation initiation factor 1A, X-linked [Bos taurus], ...	173.0	[0..1]	[131..1]
gi\|30584999, gi\|... - gi\|61371489\|gb\|AAX43676.1\| eukaryotic translation initiation factor 1A X-linked [synthetic construct...	173.0	[0..1]	[131..1]
gi\|3264536, gi\|2... - emb\|CAA17281.1\| dJ163M9.1 (protein synthesis factor) [Homo sapiens], gi\|25167328\|sp\|O75642\|IF1AH_HU...	172.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNKGKGGK NRRRGKNENE NEKRELTYAE EGQMYAQVTK MLGNGRIEAA CFDGVKRLGH  60
   61 IRGKLRKKVW INQGDIILLS LREFQDEKGD VILKYTADEA RTLKNQGELP ETAKINETDT 120
  121 FGAEGEDDLD FEFDVDAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1d7qA
Description:	Translation initiation factor-1a, eIF1a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: