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View Structure Prediction Details

Protein: dhp1
Organism: Schizosaccharomyces pombe
Length: 991 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dhp1.

Description E-value Query
Range
Subject
Range
XRN2_EMENI - 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 ...
XRN2_EMENI - 5'-3' exoribonuclease 2 OS=Emericella nidulans GN=rat1 PE=3 SV=3
1077.0 [0..1] [990..1]
XRN2_ASHGO - 5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3
XRN2_ASHGO - 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056...
1054.0 [0..1] [959..1]
RAT1 - Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snR...
XRN2_YEAST - 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAT1 PE=1 SV=3
1052.0 [0..1] [991..1]
XRN2_GIBZE - 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN...
XRN2_GIBZE - 5'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1 PE=3 SV=3
1052.0 [0..1] [990..1]
XRN2_ASPOR - 5'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=rat1 PE=3 SV=3
XRN2_ASPOR - 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rat1 PE=3 SV=3
gi|238489103, gi... - gi|238489103|ref|XP_002375789.1| 5'->3' exoribonculease Dhp1 [Aspergillus flavus NRRL3357], gi|2206...
1052.0 [0..1] [988..1]
XRN2_NEUCR - 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257...
XRN2_NEUCR - 5'-3' exoribonuclease 2 OS=Neurospora crassa GN=rat-1 PE=3 SV=3
1050.0 [0..1] [897..1]
gi|119186689, gi... - gi|90302737|gb|EAS32368.1| hypothetical protein CIMG_03392 [Coccidioides immitis RS], gi|119186689|r...
1040.0 [0..1] [991..16]
gi|115492077, gi... - gi|115492077|ref|XP_001210666.1| 5'-3' exoribonuclease 2 [Aspergillus terreus NIH2624], gi|114197526...
1026.0 [0..1] [906..1]
XRN2_CHAGB - 5'-3' exoribonuclease 2 OS=Chaetomium globosum GN=RAT1 PE=3 SV=3
XRN2_CHAGB - 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347...
1019.0 [0..1] [895..1]
XRN3_ARATH - 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
1017.0 [0..1] [991..1]

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Predicted Domain #1
Region A:
Residues: [1-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPALFRLL SRKFAKVITP VIEAPTEKLP DGTEIEPDLS LPNPNGVECD NLYLDMNGIV  60
   61 HPCSHPEDRP APETEDEMMV AVFEYTDRIL AMVRPRQLLF IAIDGVAPRA KMNQQRSRRF 120
  121 RSSREAALKE EELQAFIEEA KQQGIPIDEN ATKKKSWDSN CITPGTPFMD TLAKSLRYYI 180
  181 INKLNSDPCW RNVRFILSDA SVPGEGEHKI MEFIRSQRVK PEYDPNTHHV VYGLDADLIM 240
  241 LGLATHEPHF RVLREDVFFQ QGSTKKTKEE RLGIKRLDDV SETNKVPVKK PFIWLNVSIL 300
  301 REYLEVELYV PNLPFPFDLE RAIDDWVFFI FFVGNDFLPH LPSLDIRDGA VERLTEIWRA 360
  361 SLPHMGGYLT LDGSVNLARA EVILSAVGNQ EDDIFKRLKQ QEDRRNENYR RRQQRESNQE 420
  421 SESYVDNVVI QRSVETQSTE VVTSSKSTSV DTKPPKKTQK IDAPAPVDLV NLSEKTSNRS 480
  481 LGATNRELIN NRAANRLGLS REAAAV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.58
Match: 1ul1X
Description: Crystal structure of the human FEN1-PCNA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
DNA binding 2.74395891269151 bayes_pls_golite062009
binding 2.58539672241253 bayes_pls_golite062009
nucleic acid binding 2.54722210455433 bayes_pls_golite062009
endonuclease activity 1.2840172881923 bayes_pls_golite062009
flap endonuclease activity 1.17726395799783 bayes_pls_golite062009
endodeoxyribonuclease activity 1.12391156671522 bayes_pls_golite062009
deoxyribonuclease activity 1.11025090301954 bayes_pls_golite062009
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.07360773846975 bayes_pls_golite062009
protein binding 0.695466920831325 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.657224027340282 bayes_pls_golite062009
catalytic activity 0.585392957294978 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [507-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSVNKLAASA LKAQLVSNET LQNVPLEDSI ASSSAYEDTD SIESSTPVVH PIDTKVSNVG  60
   61 QKRKAPDSTE ENENTDTVRL YEPGYRERYY EQKFHISPDE PEKIREAVKH YVHGLCWVLL 120
  121 YYYQGCPSWT WYYPYHYAPF AADFKDLASI DVKFELNQPF KPYEQLLGVL PAASKNNLPE 180
  181 KLQTLMTDEN SEIIDFYPEN FTID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [711-778]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNGKKFEWQG VALLPFIDEN RLLNAVSKIY PQLTEEESKR NEDGSTLLFI SEHHPMFSEL  60
   61 VKQLYSKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [779-991]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQGKPLKLSG KMAHGLFGKV NTNDSVIPNV SVQCPIDVTS ADALQKYGSI DDNQSISLVF  60
   61 EVPKSHFVHK SMLLRGVKMP NRVLTPEDIN QVRAERSFSS RRNNGNSYRG GHQSYGVRRS 120
  121 YQSQSYSSRQ SYTGVTNGFA NGGVQPPWSG NGNFPRSNAS YNSRGGHEGY GGRSRGGGYS 180
  181 NGPPAGNHYS SNRGKGYGYQ RESYNNNNRN GYY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle