YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16C6.05
Organism:	Schizosaccharomyces pombe
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16C6.05.

Description	E-value	Query Range	Subject Range
gi\|39945044, gi\|... - gi\|39945044\|ref\|XP_362059.1\| hypothetical protein MG04504.4 [Magnaporthe grisea 70-15], gb\|EAA50745....	197.0	[0..2]	[190..38]
gi\|73995165 - gi\|73995165\|ref\|XP_853345.1\| PREDICTED: similar to Density-regulated protein (DRP) (DRP1 protein) (S...	194.0	[0..8]	[186..252]
DENR_NEUCR - Translation machinery-associated protein 22 OS=Neurospora crassa GN=tma-22 PE=3 SV=1 DENR_NEUCR - Translation machinery-associated protein 22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...	184.0	[0..10]	[183..7]
gi\|46108478, gi\|... - gi\|46108478\|ref\|XP_381297.1\| hypothetical protein FG01121.1 [Gibberella zeae PH-1], gi\|42545558\|gb\|E...	184.0	[0..4]	[183..8]
gi\|4755083 - gi\|4755083\|gb\|AAC02985.2\| density regulated protein drp1 [Homo sapiens]	180.0	[0..8]	[186..72]
gi\|58388299, gi\|... - gi\|58388299\|ref\|XP_316185.2\| ENSANGP00000017070 [Anopheles gambiae str. PEST], gi\|55238938\|gb\|EAA108...	177.0	[0..4]	[186..21]
DENR_CHAGB - Translation machinery-associated protein 22 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / ... DENR_CHAGB - Translation machinery-associated protein 22 OS=Chaetomium globosum GN=TMA22 PE=3 SV=1	175.0	[0..3]	[187..2]
DENR_BOVIN - Density-regulated protein OS=Bos taurus GN=DENR PE=2 SV=1	175.0	[0..8]	[186..27]
gi\|30793919, gi\|... - gi\|62319631\|dbj\|BAD95123.1\| hypothetical protein [Arabidopsis thaliana], gi\|51971214\|dbj\|BAD44299.1\|...	174.0	[0..8]	[186..6]
DENR_CHICK - Density-regulated protein OS=Gallus gallus GN=DENR PE=2 SV=1	174.0	[0..8]	[186..27]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQTIPKLK SVLYCDVCTL PVEYCEFEGT LKKCKEWLKS SHPDVYDKLY GEQDLSKDLE  60
   61 NTLNVSGT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.954
Match:	2ojlA
Description:	No description for 2ojlA was found.

Predicted Domain #2

Region A:
Residues: [69-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDSNAEEQPA KLTKEEKRVE REEAKRMASK VLIKTIERTK RKRVTTVQGL DAFGIETKKA  60
   61 AKMLANKFAT GASVTKTADK KDEIVVQGDL NYDIFDFILE KFKEVPEDNI KIVEDTKSKK 120
  121 KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.36535619829821	bayes_pls_golite062009
translation initiation factor activity	0.221356879029422	bayes_pls_golite062009
nucleic acid binding	0.213614307171087	bayes_pls_golite062009
protein binding	0.189517592830504	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: