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View Structure Prediction Details

Protein: CG3560-PA
Organism: Drosophila melanogaster
Length: 111 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3560-PA.

Description E-value Query
Range
Subject
Range
gi|68051539 - gi|68051539|gb|AAY85033.1| IP05674p [Drosophila melanogaster]
161.0 [0..1] [111..2]
gi|73999619 - gi|73999619|ref|XP_535132.2| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...
156.0 [0..3] [109..37]
gi|116116925, gi... - gi|118792492|ref|XP_320347.3| ENSANGP00000014100 [Anopheles gambiae str. PEST], gi|116116925|gb|EAA0...
155.0 [0..3] [109..8]
gi|50731732 - gi|50731732|ref|XP_418347.1| PREDICTED: similar to Ubiquinol-cytochrome C reductase complex 14 kDa p...
154.0 [0..9] [109..131]
gi|187469727, gi... - gi|34866011|ref|XP_343226.1| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...
151.0 [0..11] [109..12]
gi|13385726, gi|... - gi|74223071|dbj|BAE40676.1| unnamed protein product [Mus musculus], gi|74212278|dbj|BAE40296.1| unna...
151.0 [0..11] [109..12]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNYIARKGP AVLSNLGRWA YNLSGFNQYG LHRDDCLYEN EDVKEAVRRL PRKLYDERNY  60
   61 RIMRALHLSM TKTILPKEQW TKYEEDVKYL EPYLKEVVKE REEREDWEKI H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 1bccF
Description: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 11.5736971809848 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 11.5736971809848 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 8.17739656377432 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 5.63908133042525 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 5.48702641896397 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.88973324048899 bayes_pls_golite062009
oxidoreductase activity 4.83598965448391 bayes_pls_golite062009
cation transmembrane transporter activity 4.64530477348772 bayes_pls_golite062009
ion transmembrane transporter activity 4.44988249046834 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.04580005556932 bayes_pls_golite062009
substrate-specific transporter activity 3.85284374888084 bayes_pls_golite062009
binding 1.33677693666883 bayes_pls_golite062009
protein binding 0.634460610267232 bayes_pls_golite062009
catalytic activity 0.385153095337306 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle