| Protein: | FBpp0303704, FBp... |
| Organism: | Drosophila melanogaster |
| Length: | 354 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303704, FBp....
| Description | E-value | Query Range |
Subject Range |
|
|
268.0 | [0..12] | [353..77] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MYGNNNPGSN NNNGGYPPYG YNNKSSGGRG FGMSHSLPSG MSRYAFSPQD TEFSFPSSSS 60
61 RRGYNDFPGC GGSGGNGGSA NNLGGGNMCH LPPMASNNSL NNLCGLSLGS GGSDDLMN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [119-354] |
1 11 21 31 41 51
| | | | | |
1 DPRASNTNLI VNYLPQDMTD RELYALFRAI GPINTCRIMR DYKTGYSFGY AFVDFTSEMD 60
61 SQRAIKVLNG ITVRNKRLKV SYARPGGESI KDTNLYVTNL PRTITDDQLD TIFGKYGSIV 120
121 QKNILRDKLT GRPRGVAFVR YNKREEAQEA ISALNNVIPE GGSQPLSVRL AEEHGKAKAA 180
181 HFMSQMGVVP ANVPPPPPQP PAHMAAAFNM MHRGRSIKSQ QRFQNSHPYF DAKKFI
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.970421843909091 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.87522799562879 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.625848256054783 | bayes_pls_golite062009 |
| translation regulator activity | 0.583455818533482 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.461000905454505 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.333822192939807 | bayes_pls_golite062009 |
