| Protein: | FBpp0310168, rb-... |
| Organism: | Drosophila melanogaster |
| Length: | 1160 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310168, rb-....
| Description | E-value | Query Range |
Subject Range |
|
|
868.0 | [0..1] | [1160..1] |
|
Region A: Residues: [1-692] |
1 11 21 31 41 51
| | | | | |
1 MQQNSASNPF AMSTYVERPQ MGLDVEFGAD PASGAAFFQS DGRKHDDLKQ MLDSNKDGLK 60
61 LEAMKRIIGM IARGRDASDL FPAVVKNVVS KNIEVKKLVY VYLVRYAEEQ QDLALLSIST 120
121 FQRALKDPNQ LIRASALRVL SSIRVSMIVP IVMLAIRDSA ADLSPYVRKT AAHAIPKLYS 180
181 LDADQKDELV MVIEKLLSDR TTLVVGSAVM AFDEVCPERV DLIHKNYRKL CNFLLDVDEW 240
241 GQVIIINMLT RYARTQFVDP NADDEDLVND GLGETPVSER FYDESSHSSS HSDDGSSDDE 300
301 KNKSSTNNKN NGGGNGSRTP SSPSNSYHID VDHRLLLRQT KPLLQSRNAS VVMAVAQLYH 360
361 HVAPKNEVQL IAKALIRLLR SHKEVQSVVL NCIASMSTKR KAIFEPHLKS FFVRTSDPTH 420
421 IKLLKLDILT NLASAGSISL ILREFQTYIS SSDRSFVAAT IQAIGRCASS IKEVTETCLS 480
481 GLVHLLSNHD EHVVAESVVV IKRLLQTKAA EHFEIITQMA KLIDYINVPA ARAAIIWLIG 540
541 EYNEKVPLIA PDVLRKMAKS FVDEQDVVKL QVLNLGVKLY LTNPEQTSLL CQYVFTLARY 600
601 DPNYDVRDRA RFLRQIIFPA SGTSSVLSQH ARQVFLASKP APVPESKYRD GNNFQLGSLS 660
661 HYLNMPAAGY KELPAFPVIP PDSSVRNIAG FM
|
| Detection Method: |  |
| Confidence: | 124.0 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 3.59686293424084 | bayes_pls_golite062009 |
| binding | 2.6374633159018 | bayes_pls_golite062009 |
| protein transporter activity | 1.89064797870418 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49303189891558 | bayes_pls_golite062009 |
| transporter activity | 1.23282648733451 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.820796192007653 | bayes_pls_golite062009 |
| transcription regulator activity | 0.776371008347153 | bayes_pls_golite062009 |
| DNA binding | 0.722443852840929 | bayes_pls_golite062009 |
| transcription factor activity | 0.118119079678823 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.065389787765811 | bayes_pls_golite062009 |
| kinase activity | 0.022490934605857 | bayes_pls_golite062009 |
| protein kinase activity | 0.017827998785715 | bayes_pls_golite062009 |
|
Region A: Residues: [693-750] |
1 11 21 31 41 51
| | | | | |
1 QDKLPGEDSP SGHSKDKSGR EGGKEKGAGG EKGFLSESDD KSSAYSESGS SSGSGTSD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [751-921] |
1 11 21 31 41 51
| | | | | |
1 SESDSDGSGS SDEEEEEVQK QQPTKVSSVK ERLIDAGSNE LAATSSPVKA TINNNNNARG 60
61 SSGTSDSEDS SAYSGSSSDD SASGSDNEVK KNETKTDTGT KPEKLKEKHE KQPEQTAVKS 120
121 NLDLLLDLDD IPPIGPVMTP SLGGFLTPGT PMMAGQAAPL QPQHARNRVE L
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [922-1014] |
1 11 21 31 41 51
| | | | | |
1 VGPSHIEFKH KELLNKVSGH GLHLAYRFTR SPHLYSSSMC SIELQFQNRG EKEITAIRLG 60
61 QTTLPAGMQL NEFAPITVLQ PQQTASGVLG VDF
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1iu1A |
| Description: | Gamma1-adaptin domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.93554535044651 | bayes_pls_golite062009 |
| protein binding | 1.17960228368657 | bayes_pls_golite062009 |
| transporter activity | 0.169557557237959 | bayes_pls_golite062009 |
|
Region A: Residues: [1015-1160] |
1 11 21 31 41 51
| | | | | |
1 NDSTHAVDLE LLSSAGSSRL QLKPPVGELV RSVQIGESCH REERAKLRGM NEHQCELRGL 60
61 RQDLIDVVAL RQKVFESINV AHTHSSSSGQ LHCFAGQTLS SKSLVLLTLD WKTEDALTLL 120
121 VNCEKMVIGS MVLNELRNAL QLSFAM
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 1w80A |
| Description: | Crystal structure of the alpha-adaptin appendage domain, from the AP2 adaptor complex, bound to 2 peptides from Synaptojanin170 |
Matching Structure (courtesy of the PDB): |
|
