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View Structure Prediction Details

Protein: l(1)G0144-PA, FB...
Organism: Drosophila melanogaster
Length: 398 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(1)G0144-PA, FB....

Description E-value Query
Range
Subject
Range
gi|91079875 - gi|91079875|ref|XP_967579.1| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]
239.0 [0..8] [389..238]

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Predicted Domain #1
Region A:
Residues: [1-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERNEKKV LCEKIIRDIN AVFLKDQDLA SFEIIPKEAN CNKSPVVHVE HNLGLESWCA  60
   61 QHVYDHAHRT LISHRRQTTA QQLRTLQQQQ QSDSLAKYLN VALLINPDVT TFWHIRRQLV 120
  121 QKNRLSINKE LQFSALVLSI KPKSNEAFAY RRWLYSFQSA DAIDWPNEIG ICERAADRCA 180
  181 SNYHAWSHRQ WILQNGPCLL QSELLRTEKF MRKHISDYSC YHYRQVLLSR AYELSFALPK 240
  241 DSGASGSSTL ASLQHLMTSY GLECEANAED LLGLLLPHVD LSSVSKQRLI SFLYCCNVAA 300
  301 NDMRLCAEQR LMYGSRDCFE LHRRAALKFI VEQCVRLQMG LPNGQLLPVA SGDLRSHLGN 360
  361 FDFEDNPFLS AVRREESTLG GKHRRWCNLH LSFGYPAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.30103
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.726259215943938 bayes_pls_golite062009
protein binding 0.515862444383273 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle