| Protein: | mod-PA, FBpp0301951 |
| Organism: | Drosophila melanogaster |
| Length: | 542 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mod-PA, FBpp0301951.
| Description | E-value | Query Range |
Subject Range |
|
|
287.0 | [0..166] | [532..2] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 MAQKKAVTVK GKKATNGEEK PLAKRVTKST KVQEEETVVP QSPSKKSRKQ PVKEVPQFSE 60
61 EDESDVEEQN DEQPGDDSDF ETEEAAGLID DEAEEDEEYN SDDEEDDDDD ELEPGEVSKS 120
121 EGADEVDESD DDEEAPVEKP VSKKSEKANS EKSEENRGIP KVKVGKI
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [168-248] |
1 11 21 31 41 51
| | | | | |
1 PLGTPKNQIV FVTNLPNEYL HKDLVALFAK FGRLSALQRF TNLNGNKSVL IAFDTSTGAE 60
61 AVLQAKPKAL TLGDNVLSVS Q
|
| Detection Method: | |
| Confidence: | 38.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.2072391084044 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| mRNA binding | 2.19775829895338 | bayes_pls_golite062009 |
| RNA binding | 1.69266495798651 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
|
Region A: Residues: [249-542] |
1 11 21 31 41 51
| | | | | |
1 PRNKEENNER TVVVGLIGPN ITKDDLKTFF EKVAPVEAVT ISSNRLMPRA FVRLASVDDI 60
61 PKALKLHSTE LFSRFITVRR ISQESISRTS ELTLVVENVG KHESYSSDAL EKIFKKFGDV 120
121 EEIDVVCSKA VLAFVTFKQS DAATKALAQL DGKTVNKFEW KLHRFERSTS GRAILVTNLT 180
181 SDATEADLRK VFNDSGEIES IIMLGQKAVV KFKDDEGFCK SFLANESIVN NAPIFIEPNS 240
241 LLKHRLLKKR LAIGQTRAPR KFQKDTKPNF GKKPFNKRPA QENGGKSFVK RARF
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| binding | 3.2072391084044 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| mRNA binding | 2.19775829895338 | bayes_pls_golite062009 |
| RNA binding | 1.69266495798651 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
