| Protein: | Med-PB |
| Organism: | Drosophila melanogaster |
| Length: | 697 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Med-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
520.0 | [0..1] | [697..1] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MGGGSGACPP AHMYGAVAPQ DIIVRDMVQM PPPPSNAPTS ADACLSIVHS LMCHRQGGES 60
61 EGFAKRAIES LVKKLKEKRD ELDSLITAIT TNGAHPSKCV TIQRTLDGRL QVAGRKGFPH 120
121 VIYARIWRWP DLHKNELKHV KYCAFAFDLK CDSVCVNPYH YERVVS
|
| Detection Method: |  |
| Confidence: | 47.045757 |
| Match: | 1mhdA |
| Description: | SMAD MH1 domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [167-399] |
1 11 21 31 41 51
| | | | | |
1 PGIDLSGLSL QSGPSRLVKD EYSAGPLVGS MDIDGNDIGT IQHHPTQMVG PGGYGYPQGP 60
61 SEYAVPHGMP GMPGPMNPGP VMAPPPPPQQ AQNPQGNGVH HTQANSPTDP ASALAMQQQQ 120
121 QQQQQQQQQQ QQQQQQSGGV PNGSVNAGGG AAAGGQYYGQ PPPVSQMQGA GGGGTSVAPS 180
181 VHAQQNGYVS QPGSAGSAPV GGGGVFGTAQ PTPQQPQQPP TGVQANTGSA GAQ
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [400-456] |
1 11 21 31 41 51
| | | | | |
1 AGAGGGAAGT WTGPNTLTYT QSMQPPDPRS LPGGFWNSSL SGDLGSPQQT PPQQQQQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [457-697] |
1 11 21 31 41 51
| | | | | |
1 QQQPRLLSRQ PPPEYWCSIA YFELDTQVGE TFKVPSAKPN VIIDGYVDPS GGNRFCLGAL 60
61 SNVHRTEQSE RARLHIGKGV QLDLRGEGDV WLRCLSDNSV FVQSYYLDRE AGRTPGDAVH 120
121 KIYPAACIKV FDLRQCHQQM HSLATNAQAA AAAQAAAVAG VANQQMGGGG RSMTAAAGIG 180
181 VDDLRRLCIL RLSFVKGWGP DYPRQSIKET PCWIEVHLHR ALQLLDEVLH AMPIDGPRAA 240
241 A
|
| Detection Method: | |
| Confidence: | 83.522879 |
| Match: | 1ygsA |
| Description: | CRYSTAL STRUCTURE OF THE SMAD4 TUMOR SUPPRESSOR C-TERMINAL DOMAIN |
Matching Structure (courtesy of the PDB): |
|
