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View Structure Prediction Details

Protein: PH4alphaMP-PA
Organism: Drosophila melanogaster
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PH4alphaMP-PA.

Description E-value Query
Range
Subject
Range
gi|62897481, gi|... - pir||DAHUA1 procollagen-proline dioxygenase (EC 1.14.11.2) alpha chain precursor, splice form 1 - hu...
gi|114631173, gi... - gi|114631175|ref|XP_001140955.1| PREDICTED: prolyl 4-hydroxylase, alpha I subunit isoform 11 [Pan tr...
377.0 [0..1] [525..1]

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Predicted Domain #1
Region A:
Residues: [1-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAKCVLFL VLQVLSCHGE FFSSTSGLAK LFETEVVLLA ELQNYVNEIN QHAEALQSEI  60
   61 DAIRVEHLNA ADGIDDYLNN PVNAFRLIKR LHSDWETFEG SVTADSSRSN YLDTMASLKE 120
  121 NLSFPSQDDF VGSAIALTRL QQTYQLDVAE LASGILNGVK YGTAMSWQDC FVLGQHLYAL 180
  181 RDYNHTVPWL QQSMQLLGEQ SYGSESASLD FMEAVVEYHR EMGAHESALS LVNHVLSIEP 240
  241 DQRSHLLEAR QQLEELITDG DKNGLLHLTA RRPGDYHESR EFRMYEQVCR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
procollagen-proline 4-dioxygenase activity 7.0422525853653 bayes_pls_golite062009
procollagen-proline dioxygenase activity 7.0422525853653 bayes_pls_golite062009
peptidyl-proline dioxygenase activity 7.0422525853653 bayes_pls_golite062009
peptidyl-proline 4-dioxygenase activity 7.0422525853653 bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 5.01373106146099 bayes_pls_golite062009
binding 2.09193012129784 bayes_pls_golite062009
protein binding 1.52807685989528 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor 0.534990536504941 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [291-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GELAPLPSKQ RNLRCRLRKS RLGYAPFKLE ELHLDPLVVQ LHQVIGSKDS DSLQKTARPR  60
   61 IKRSTVYSLG GNGGSTAAAF RTSQGASFNY SRNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 2c2lA
Description: Crystal structure of the CHIP U-box E3 ubiquitin ligase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [385-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATKLLSRHVG DFSGLNMDYA EDLQVANYGI GGHYEPHWDS FPENHIYQEG DLHGNRMATG  60
   61 IYYLADVEAG GGTAFPFLPL LVTPERGSLL FWYNLHPSGD QDFRTKHAAC PVLQGSKWIA 120
  121 NVWIRERNQD NVRPCDLERG QEISLHYRDF D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.38
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle