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View Structure Prediction Details

Protein: Sry-beta-PA
Organism: Drosophila melanogaster
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sry-beta-PA.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
562.0 [0..2] [355..2515]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTRPFCFV CGKEKSVGVF QLIEGCIVPG TFKPIKDILK YFEKIINQRL ELLPNSAACR  60
   61 DCLEYLFNYD RLVRNLSQVQ RQIADALLGC RQVEGKAETK QQAAKRARVQ VPAFKIVQAT 120
  121 ALKEPERQPG EEDECEEFMK EEMLDEEFQF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.221849
Match: 2dlqA
Description: No description for 2dlqA was found.

Predicted functions:

Term Confidence Notes
transcription regulator activity 4.70988788192472 bayes_pls_golite062009
nucleic acid binding 4.58713908116892 bayes_pls_golite062009
DNA binding 4.56219307357342 bayes_pls_golite062009
transcription factor activity 3.50954949535763 bayes_pls_golite062009
transcription repressor activity 3.27542149084008 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.22082323675675 bayes_pls_golite062009
binding 3.10743787485868 bayes_pls_golite062009
transcription activator activity 2.19952417915035 bayes_pls_golite062009
chromatin binding 2.18464662431232 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 1.63161912031789 bayes_pls_golite062009
sequence-specific DNA binding 1.42975942698743 bayes_pls_golite062009
transcription factor binding 1.39608963544799 bayes_pls_golite062009
transcription corepressor activity 1.34049786451995 bayes_pls_golite062009
protein binding 1.00484935878505 bayes_pls_golite062009
transcription cofactor activity 0.77874411480713 bayes_pls_golite062009
catalytic activity 0.245893663605433 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [151-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPDDSMPSS EEEFFTETTE IPCHICGEMF SSQEVLERHI KADTCQKSEQ ATCNVCGLKV  60
   61 KDDEVLDLHM NLHEGKTELE CRYCDKKFSH KRNVLRHMEV HWDKKKYQCD KCGERFSLSW 120
  121 LMYNHLMRHD AEENALICEV CHQQFKTKRT YKHHLRTHQT DRPRYPCPDC EKSFVDKYTL 180
  181 KVHKRVHQPV EKPESAEAKE ATVTFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.522879
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle