Protein: | CAP-D2-PA |
Organism: | Drosophila melanogaster |
Length: | 1380 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP-D2-PA.
Description | E-value | Query Range |
Subject Range |
|
1209.0 | [0..5] | [1380..9] |
Region A: Residues: [1-150] |
1 11 21 31 41 51 | | | | | | 1 MEESHDFQFV LPLNASDLIN SSGDQYYVKE IFGAQEIPAK LQECKRKVHL GDPFYIFEHF 60 61 DLYYSIIEAR GSDGASAQNL MRSFDLLYLT VEKLFQDLQP LLTASEPMSN QQRNSYLNLT 120 121 KMTLFLQVST VKKINNSVQQ AMRDQQLNVQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [151-253] |
1 11 21 31 41 51 | | | | | | 1 KKRAKPSEGL EQFPNWEVKR GKFLVQLFNV LQCPLEKLWS PPVAEEDFIN LLCDPCYRTI 60 61 ELLPLRMDNK HVFDTIFQIL GTSIKRFNQA MTFPVRILQI LRG |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [254-610] |
1 11 21 31 41 51 | | | | | | 1 TEHAAHSVAA GILLLHEEYG ISSVFSILIK SIVDALRMDS SDSSVSKHFS NFLAEFSNIA 60 61 PSLIVPHLEK LAEDLLDCQS HTLRNCVLQI IGDTVVSELT SEDLSEELKE VRNEFLEHLM 120 121 AHILDISAHV RSKVLSIWHH LKTQHAIPLN FLTRVLEEAI GRLEDKSSLV RRAAMHLIKS 180 181 ALESNPYSSK LSIDELRAKH EHEVQAMEKL NEVLEEERKQ EEKLNDEFSS LAPELLPFIE 240 241 ENLTEFPDMQ FDKEESDETL MERIIPLMRE KNYKDVIVLV RKVDFLAGNQ NMSSLLKHEE 300 301 HCVYVLALLK TYHLLAAGFK QSSEEMLQQI KTVQFLKDSI DFAVLMTSAF PKLHEML |
Detection Method: | |
Confidence: | 18.69897 |
Match: | 1uklA |
Description: | Crystal structure of Importin-beta and SREBP-2 complex |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [611-730] |
1 11 21 31 41 51 | | | | | | 1 MSKTNTDVFE AVDLFTTGYM FGIHGTESGM QRMLQLVWSS DKEKRDAVSD AYKRVLFSTD 60 61 QTGRAHAIKV VQNLSKFLSE IEYGHYTALE SLMTEWVLGG DIDAAVIQVL FERFTLKLEG 120 121 |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [731-817] |
1 11 21 31 41 51 | | | | | | 1 TTSNESRLSL QLLIMASQSK SSIVSANTAI IEDIAVGERV RRDPRIFTSC LQLLVNSIDA 60 61 NNTAKYYKRQ NSDAEFVGKI TRLFLDF |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [818-977] |
1 11 21 31 41 51 | | | | | | 1 FFHRSLYDFD ALAMSVFEYF YRMCQAPDVI AQQLVTALLK QFNESWLVKE AAAIVPSPDK 60 61 ADTETVPDSQ PLEIPHSQTL TPTQTQADSQ SQMQGTLIPV YLVSRLIFCI GYMTIKEMIF 120 121 LDMDIYNNMK YRDELTALEE RKNRNQQAGS SHNAARLTLN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [978-1380] |
1 11 21 31 41 51 | | | | | | 1 MSAMEVRKRL SGVAAEPQQE PDDDLVGATA EDNIAEEIHG ICEDMLLYNP DALLSKLAPF 60 61 IIEICKRPGE FGDPTLQQAA TLALARLMTV SSRFCESNMS FLMNILNLTK NIRIKCNTVV 120 121 GLSDLTFRFP NIIEPWTGHF YAQLHESNTE LRLTAVKMLS HLILNEMIRV KGQIADMALC 180 181 IVDGNEEIRN ITKQFFKEIA NKSNILYNVL PDIISRLGDI NLNLDEDKYR IIMSYILGLI 240 241 QKDRQIETLV EKLCLRFPVT RVERQWRDIA YCLGLLTYNE RAVKKLMDNM QHYRDKVQVD 300 301 EVYQSFKLII SNTNKLAKPE LKAVVTEFEN RLNECLQVNP DTAAQGDQES TPEGQGNRTR 360 361 AAPRTKKGGR KPAANRNNTV RGRGRRARRD STSEESFSSS SSD |
Detection Method: | |
Confidence: | 88.045757 |
Match: | 1gw5B |
Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.91891696274037 | bayes_pls_golite062009 |
protein binding | 1.94427330399472 | bayes_pls_golite062009 |
cytoskeletal protein binding | 1.61037669901273 | bayes_pls_golite062009 |
actin binding | 0.891762677781115 | bayes_pls_golite062009 |
nucleic acid binding | 0.169755106399802 | bayes_pls_golite062009 |