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View Structure Prediction Details

Protein: FBpp0307940, Trf...
Organism: Drosophila melanogaster
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307940, Trf....

Description E-value Query
Range
Subject
Range
gi|109076763 - gi|109076763|ref|XP_001103318.1| PREDICTED: similar to DNA polymerase sigma [Macaca mulatta]
307.0 [0..7] [387..277]

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Predicted Domain #1
Region A:
Residues: [1-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDEANPAKP WQLPDVVYGN GIPALCLLHQ EIEQFYNYIR STPTEFCLRA GAVRRIEDVV  60
   61 LSIWPSASVD LFGSFRTGLN LPDSDIDLVV YYKFWNPRLL HELQNELVSQ GVTDPDTVTV 120
  121 LDKASVPVVK FTDLISRIRF DVTFNSVASG VQAADLIKDF IRHFPELPKL VMVLKQFLSL 180
  181 HGFNEVYNSG GVSSYALTLM VISFLQQHAR SNRRLSEHSK LALLLIQFLD YYGRKFDFFK 240
  241 YGISVLGQGG CVEKARLRST LGENNWQSVL CIEDPVTPTN DIGRSSYGVL GVMQGFGAAF 300
  301 VKLSKLVDSD SSKIVGPILA NIVEVPQSII NYRAWVHYNF QHLLTPELPC ADSLVQPSPT 360
  361 GSTSPSASAS ASEDERSGGP ATIGFGRCDD PPQNIDIVAD LANLKMN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 1q78A
Description: Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.33304794312594 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.827216703196783 bayes_pls_golite062009
nucleotidyltransferase activity 0.782538534425072 bayes_pls_golite062009
protein binding 0.325334122978198 bayes_pls_golite062009
transferase activity 0.212392916986958 bayes_pls_golite062009
catalytic activity 0.209725173901451 bayes_pls_golite062009
transcription factor binding 0.136601293399466 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle