YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: klg-PA
Organism: Drosophila melanogaster
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klg-PA.

Description E-value Query
Range
Subject
Range
Dscam-PAJ - The gene Down syndrome cell adhesion molecule is referred to in FlyBase by the symbol Dmel\Dscam (CG...
347.0 [0..5] [535..530]

Back

Predicted Domain #1
Region A:
Residues: [1-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIISRSIRT GALAPPITAH ASANANASGL RKSSQRRNRA PLQMNCPILI VISLGWLLHA  60
   61 HAGSGGFAVE AAISNRGSNS RSMSNVQQSA VAASTLTATL PRFLSRGHTY RAVVGDTLVL 120
  121 PCQVENLGNF VLLWRRGTNV LTASNIMVTR DERVRLIDGY NLEISDLEPQ DAGDYVCQIS 180
  181 DKINRDQVHT VEILVPPSVR AIPTSGQLQA RKGGPITLEC KGSGNPVPSI YWTKKSGANK 240
  241 STARIGDGPI LTLEKLERQQ AGVYQCTADN GVGDPVTVDM RLDVLYPPDI QVEKSWIHSG 300
  301 EGFEAKLVCI VFADPVATVS WYQNSFPIQS TDRRIMATRA NRHMLTIRHI QQEDFGNYSC 360
  361 VADNSLGRSR KYMELSGRPG AAEFYSPKWG RSPDSYNLTW KIDSYPPLEE VRLLYRRVQM 420
  421 NETYQQPGRW HDFILTPEHR PASEPLTHIM SYTIKNLHPG GYYEAIVQAK NRYGWNEVSD 480
  481 IFQFVVATNS QDIGPEDAEV VASSKSRSNS ASIGSLPGST VLHTALLLAL ALSNCQFDRR 540
  541 RLGLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.221849
Match: 1e07A
Description: Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle